tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.3 (April 2019) scan results 
Started: Sun May 12 18:39:57 PDT 2019

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Search Mode:                       Bacterial
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-bact.cm
                                   TRNAinf-bact-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1
Seqs w/at least 1 hit:  1
Bases read:             1270751 (x2 for both strands)
Bases in tRNAs:         2665
tRNAs predicted:        34
Av. tRNA length:        78
Script CPU time:        0.18 s
Scan CPU time:          4.46 s
Scan speed:             569.8 Kbp/sec

First pass search(es) ended: Sun May 12 18:39:58 PDT 2019

Infernal Stats:
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Candidate tRNAs read:     34
Infernal-confirmed tRNAs:     34
Bases scanned by Infernal:  3345
% seq scanned by Infernal:  0.1 %
Script CPU time:          0.23 s
Infernal CPU time:            24.27 s
Scan speed:               137.8 bp/sec

Infernal analysis of tRNAs ended: Sun May 12 18:40:22 PDT 2019

Overall scan speed: 87217.0 bp/sec