tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 34
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 34
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 1308
Number of Codons: 320050

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
 
TGC
1
2
GCT
2.67
GCC
0.81
GCG
0.48
GCA
2.59
6.55%
GlyACC
 
GCC
1
CCC
 
TCC
1
2
GGT
2.48
GGC
0.92
GGG
0.64
GGA
1.46
5.5%
ProAGG
 
GGG
 
CGG
 
TGG
1
1
CCT
1.57
CCC
0.22
CCG
0.9
CCA
0.65
3.34%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
2.24
ACC
0.85
ACG
0.69
ACA
1.47
5.25%
ValAAC
 
GAC
1
CAC
 
TAC
1
2
GTT
2.17
GTC
0.45
GTG
0.63
GTA
2.48
5.73%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
 
TGA
1
ACT
 
GCT
1
 
 
 
 
3
TCT
1.6
TCC
0.43
TCG
0.53
TCA
1.4
AGT
1.65
AGC
1.03
 
 
 
 
6.64%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
 
TCT
1
3
CGT
0.88
CGC
0.22
CGG
0.1
CGA
0.29
 
 
 
 
AGG
0.38
AGA
1.53
3.4%
LeuAAG
 
GAG
1
CAG
 
TAG
1
 
 
 
 
CAA
 
TAA
1
3
CTT
2.12
CTC
0.32
CTG
0.37
CTA
1.29
 
 
 
 
TTG
0.93
TTA
5.08
10.11%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
3.87
TTC
0.8
 
 
 
 
4.67%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
5.14
AAC
1.24
 
 
 
 
6.38%
Lys 
 
 
 
CTT
 
TTT
1
1
 
 
 
 
AAG
1.71
AAA
6.62
8.33%
AspATC
 
GTC
1
 
 
 
 
1
GAT
4.08
GAC
0.85
 
 
 
 
4.93%
Glu 
 
 
 
CTC
 
TTC
1
1
 
 
 
 
GAG
1.65
GAA
4.52
6.17%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.5
CAC
0.34
 
 
 
 
1.84%
Gln 
 
 
 
CTG
 
TTG
2
2
 
 
 
 
CAG
0.8
CAA
2.38
3.18%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
4.51
ATC
1.2
 
 
ATA
4.19
9.9%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.16
 
 
2.16%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
3.1
TAC
0.62
 
 
 
 
3.72%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.08
TAG
0.09
TAA
0.23
0.4%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.6
TGC
0.33
 
 
 
 
0.93%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.74
 
 
0.74%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
-