tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 44
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 2
Predicted pseudogenes 0
Total tRNAs 46
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 2833
Number of Codons: 1015092

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
0.42
GCC
5.76
GCG
3.82
GCA
0.66
10.66%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
0.37
GGC
4.18
GGG
2.95
GGA
0.85
8.35%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.34
CCC
2.29
CCG
2.72
CCA
0.29
5.64%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.21
ACC
2.74
ACG
2.95
ACA
0.3
6.2%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.61
GTC
3.03
GTG
3.92
GTA
0.35
7.91%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.3
TCC
1.64
TCG
1.88
TCA
0.19
AGT
0.34
AGC
1.44
 
 
 
 
5.79%
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
 
4
CGT
0.65
CGC
3.21
CGG
2.94
CGA
0.64
 
 
 
 
AGG
0.18
AGA
0.1
7.72%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
 
4
CTT
0.94
CTC
4.33
CTG
3.67
CTA
0.2
 
 
 
 
TTG
0.48
TTA
0.04
9.66%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
1.04
TTC
2.34
 
 
 
 
3.38%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.43
AAC
2.01
 
 
 
 
2.44%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.69
AAA
0.42
2.11%
AspATC
 
GTC
1
 
 
 
 
1
GAT
1.05
GAC
5.93
 
 
 
 
6.98%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
5.61
GAA
1.4
7.01%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.31
CAC
1.91
 
 
 
 
2.22%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
3.08
CAA
0.45
3.53%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.99
ATC
2.64
 
 
ATA
0.07
3.7%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
1.82
 
 
1.82%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.2
TAC
2.33
 
 
 
 
2.53%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.1
TAG
0.13
TAA
0.05
0.28%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.1
TGC
0.51
 
 
 
 
0.61%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.25
 
 
1.25%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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