tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.2 (February 2019) scan results 
Started: Wed Apr 24 09:48:30 PDT 2019

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Search Mode:                       Bacterial
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-bact.cm
                                   TRNAinf-bact-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         5
Seqs w/at least 1 hit:  2
Bases read:             3832918 (x2 for both strands)
Bases in tRNAs:         4182
tRNAs predicted:        49
Av. tRNA length:        85
Script CPU time:        0.46 s
Scan CPU time:          35.77 s
Scan speed:             214.3 Kbp/sec

First pass search(es) ended: Wed Apr 24 09:48:38 PDT 2019

Infernal Stats:
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Candidate tRNAs read:     49
Infernal-confirmed tRNAs:     47
Bases scanned by Infernal:  5162
% seq scanned by Infernal:  0.1 %
Script CPU time:          0.36 s
Infernal CPU time:            56.00 s
Scan speed:               92.2 bp/sec

Infernal analysis of tRNAs ended: Wed Apr 24 09:49:21 PDT 2019

Overall scan speed: 82793.3 bp/sec