tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 44
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 3
Predicted pseudogenes 0
Total tRNAs 47
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 3257
Number of Codons: 1109259

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
0.48
GCC
5.65
GCG
3.74
GCA
0.71
10.58%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
0.4
GGC
4.07
GGG
2.94
GGA
0.93
8.34%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.38
CCC
2.29
CCG
2.69
CCA
0.34
5.7%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.24
ACC
2.7
ACG
2.91
ACA
0.34
6.19%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.66
GTC
2.99
GTG
3.81
GTA
0.37
7.83%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.3
TCC
1.66
TCG
1.89
TCA
0.22
AGT
0.36
AGC
1.47
 
 
 
 
5.9%
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
 
4
CGT
0.68
CGC
3.15
CGG
2.93
CGA
0.69
 
 
 
 
AGG
0.21
AGA
0.12
7.78%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
 
4
CTT
1.01
CTC
4.25
CTG
3.62
CTA
0.21
 
 
 
 
TTG
0.53
TTA
0.05
9.67%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
1.07
TTC
2.31
 
 
 
 
3.38%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.46
AAC
1.97
 
 
 
 
2.43%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.69
AAA
0.46
2.15%
AspATC
 
GTC
1
 
 
 
 
1
GAT
1.11
GAC
5.78
 
 
 
 
6.89%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
5.55
GAA
1.47
7.02%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.33
CAC
1.87
 
 
 
 
2.2%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
3.04
CAA
0.48
3.52%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
1
ATC
2.59
 
 
ATA
0.08
3.67%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
1.82
 
 
1.82%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.2
TAC
2.27
 
 
 
 
2.47%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.11
TAG
0.14
TAA
0.05
0.3%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.1
TGC
0.53
 
 
 
 
0.63%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.27
 
 
1.27%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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