tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 77
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 2
Total tRNAs 80
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 4262
Number of Codons: 1317226

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
2
CGC
 
TGC
2
4
GCT
1.26
GCC
2.92
GCG
4.32
GCA
1.25
9.75%
GlyACC
 
GCC
4
CCC
1
TCC
1
6
GGT
1.72
GGC
3.6
GGG
1.18
GGA
0.85
7.35%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.71
CCC
0.69
CCG
2.48
CCA
0.57
4.45%
ThrAGT
 
GGT
2
CGT
1
TGT
1
4
ACT
0.67
ACC
2.33
ACG
1.9
ACA
0.56
5.46%
ValAAC
 
GAC
2
CAC
 
TAC
4
6
GTT
1.56
GTC
1.84
GTG
2.5
GTA
1.13
7.03%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
2
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
5
TCT
0.7
TCC
1
TCG
0.96
TCA
0.61
AGT
0.71
AGC
1.74
 
 
 
 
5.72%
ArgACG
3
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
2
TCT
2
8
CGT
1.87
CGC
2.34
CGG
0.65
CGA
0.35
 
 
 
 
AGG
0.14
AGA
0.22
5.57%
LeuAAG
 
GAG
1
CAG
4
TAG
1
 
 
 
 
CAA
1
TAA
1
8
CTT
1.19
CTC
1.05
CTG
5.32
CTA
0.5
 
 
 
 
TTG
1.28
TTA
1.36
10.7%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
2.35
TTC
1.52
 
 
 
 
3.87%
AsnATT
 
GTT
4
 
 
 
 
4
AAT
1.79
AAC
2
 
 
 
 
3.79%
Lys 
 
 
 
CTT
 
TTT
5
5
 
 
 
 
AAG
1.08
AAA
3.18
4.26%
AspATC
 
GTC
3
 
 
 
 
3
GAT
3.17
GAC
1.99
 
 
 
 
5.16%
Glu 
 
 
 
CTC
 
TTC
2
2
 
 
 
 
GAG
2.02
GAA
3.52
5.54%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.36
CAC
0.95
 
 
 
 
2.31%
Gln 
 
 
 
CTG
2
TTG
2
4
 
 
 
 
CAG
3.06
CAA
1.3
4.36%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
2
CAT
1
TAT
 
3
ATT
2.99
ATC
2.47
 
 
ATA
0.52
5.98%
fMet/Met 
 
 
 
CAT
3/2
 
 
5
 
 
 
 
ATG
2.75
 
 
2.75%
TyrATA
 
GTA
3
 
 
 
 
3
TAT
1.7
TAC
1.13
 
 
 
 
2.83%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.1
TAG
0.03
TAA
0.2
0.33%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.4
TGC
0.67
 
 
 
 
1.07%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.51
 
 
1.51%
SelCys 
 
 
 
 
 
TCA
1
1
 
 
 
 
 
 
 
 
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