tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 52
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 2
Total tRNAs 54
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 2845
Number of Codons: 803670

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
 
CGC
 
TGC
3
3
GCT
2.01
GCC
0.44
GCG
0.93
GCA
2.96
6.34%
GlyACC
 
GCC
1
CCC
 
TCC
5
6
GGT
3.24
GGC
0.93
GGG
0.43
GGA
1.41
6.01%
ProAGG
 
GGG
 
CGG
 
TGG
1
1
CCT
1.07
CCC
0.1
CCG
0.39
CCA
1.62
3.18%
ThrAGT
 
GGT
 
CGT
 
TGT
2
2
ACT
1.66
ACC
0.26
ACG
0.94
ACA
2.87
5.73%
ValAAC
 
GAC
 
CAC
 
TAC
2
2
GTT
2.73
GTC
0.74
GTG
0.95
GTA
2.26
6.68%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
 
TGA
3
ACT
 
GCT
1
 
 
 
 
5
TCT
1.2
TCC
0.17
TCG
0.39
TCA
2.04
AGT
1.68
AGC
0.52
 
 
 
 
6%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
 
TCT
1
3
CGT
1.33
CGC
0.31
CGG
0.05
CGA
0.49
 
 
 
 
AGG
0.14
AGA
1.17
3.49%
LeuAAG
 
GAG
1
CAG
 
TAG
1
 
 
 
 
CAA
1
TAA
1
4
CTT
1.08
CTC
0.21
CTG
0.24
CTA
0.86
 
 
 
 
TTG
1.36
TTA
5.42
9.17%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
3.32
TTC
1.19
 
 
 
 
4.51%
AsnATT
 
GTT
3
 
 
 
 
3
AAT
4.33
AAC
1.33
 
 
 
 
5.66%
Lys 
 
 
 
CTT
 
TTT
2
2
 
 
 
 
AAG
1.42
AAA
6.13
7.55%
AspATC
 
GTC
4
 
 
 
 
4
GAT
4.56
GAC
1.24
 
 
 
 
5.8%
Glu 
 
 
 
CTC
 
TTC
3
3
 
 
 
 
GAG
1.04
GAA
5.42
6.46%
HisATG
 
GTG
2
 
 
 
 
2
CAT
1.86
CAC
0.45
 
 
 
 
2.31%
Gln 
 
 
 
CTG
 
TTG
2
2
 
 
 
 
CAG
0.51
CAA
3.61
4.12%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
2
CAT
1
TAT
 
3
ATT
5.26
ATC
1.48
 
 
ATA
1.89
8.63%
fMet/Met 
 
 
 
CAT
2/1
 
 
3
 
 
 
 
ATG
2.6
 
 
2.6%
TyrATA
 
GTA
2
 
 
 
 
2
TAT
3
TAC
0.85
 
 
 
 
3.85%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.04
TAG
0.06
TAA
0.26
0.36%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.5
TGC
0.13
 
 
 
 
0.63%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.75
 
 
0.75%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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