Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGGCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGTCTCCACCA tRNA-Ala-TGC-1-1 Sc: 77.5 GGGGGCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGTCTCCACCA tRNA-Ala-TGC-1-2 Sc: 77.5 GGGGGCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGTCTCCACCA tRNA-Ala-TGC-1-3 Sc: 77.5
Arg tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCCGTAGCTCAATTGGAtA.GAGCGTTTGACTACGGATCAAGAG...........GtTATGGGTTCGACTCCTATCGGGCGCGCCA tRNA-Arg-ACG-1-1 Sc: 76.7 GCGCCCGTAGCTCAATTGGAtA.GAGCGTTTGACTACGGATCAAGAG...........GtTATGGGTTCGACTCCTATCGGGCGCG... tRNA-Arg-ACG-2-1 Sc: 69.8 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CTCCTTGTGGTGTAAT.GGAtA.ACACGTAAGATTCCGGTTCTTAAG...........A.TAGGGGTTCAATTCCCTTCAAGGAGG... tRNA-Arg-CCG-1-1 Sc: 44.7 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTCCTGGTAGCTCAGCTGGAtA.GAGCAATGGCCTTCTAAGCCATCG...........GtCGGGGGTTCGAATCCCTCCCAGGACG... tRNA-Arg-TCT-1-1 Sc: 76.5
Asn tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCACAGTAGCTCAGTGGTA.GAGCTATCGGCTGTTAACCGATCG...........GtCGTAGGTTCGAGTCCTACCTGTGGAGCCA tRNA-Asn-GTT-1-1 Sc: 80.0 TCCACAGTAGCTCAGTGGTA.GAGCTATCGGCTGTTAACCGATCG...........GtCGTAGGTTCGAGTCCTACCTGTGGAGCCA tRNA-Asn-GTT-1-2 Sc: 80.0 TCCACAGTAGCTCAGTGGTA.GAGCTATCGGCTGTTAACCGATCG...........GtCGTAGGTTCGAGTCCTACCTGTGGAGCCA tRNA-Asn-GTT-1-3 Sc: 80.0
Asp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGTCTCGTAGTGTAGCGGTtA.ACACGCCTGCCTGTCACGCAGGAG...........AtCGCGGGTTCGATTCCCGTCGAGACCGCCA tRNA-Asp-GTC-1-1 Sc: 81.1 GGTCTCGTAGTGTAGCGGTtA.ACACGCCTGCCTGTCACGCAGGAG...........AtCGCGGGTTCGATTCCCGTCGAGACCGCCA tRNA-Asp-GTC-1-2 Sc: 81.1 GGTCTCGTAGTGTAGCGGTtA.ACACGCCTGCCTGTCACGCAGGAG...........AtCGCGGGTTCGATTCCCGTCGAGACCGCCA tRNA-Asp-GTC-1-3 Sc: 81.1 GGTCTCGTAGTGTAGCGGTtA.ACACGCCTGCCTGTCACGCAGGAG...........AtCGCGGGTTCGATTCCCGTCGAGACCG... tRNA-Asp-GTC-2-1 Sc: 74.2
Cys tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<.... GGCGGCATAGCCAAGTGGTA.AGGCAGAGGTCTGCAAAACCTTT...........AtCACCGGTTCAAATCCGGT.TGCCGCCTCCA tRNA-Cys-GCA-1-1 Sc: 78.6
Gln tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGCTATAGCCAAGCGGTA.AGGCAACGGACTTTGACTCCGTCA...........CtCGTTGGTTCGAATCCAGCTAGCCCAGCCA tRNA-Gln-TTG-1-1 Sc: 73.3 TGGGCTATAGCCAAGCGGTA.AGGCAACGGACTTTGACTCCGTCA...........CtCGTTGGTTCGAATCCAGCTAGCCCAG... tRNA-Gln-TTG-2-1 Sc: 66.5
Glu tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGCTCCTTGGTCAAGCGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAGTCCCGTAGGAGTCACCA tRNA-Glu-TTC-1-1 Sc: 76.7 GGCTCCTTGGTCAAGCGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAGTCCCGTAGGAGTCA... tRNA-Glu-TTC-2-1 Sc: 69.8 GGCTCCTTGGTCAAGCGGTtA.AGACACCGCCCTTTCACGGCGGTA...........ACACGGGTTCGAGTCCCGTAGGAGTCA... tRNA-Glu-TTC-2-2 Sc: 69.8
Gly tRNAs
>>>>>>>..>>>>.............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCAGAAGTAGTTCAGC..GGT.A...GAATACAACCTTGCCAAGGTTGGG...........GtCGCGGGTTCGAATCCCGT.CTTCTGCTCCA tRNA-Gly-GCC-1-1 Sc: 85.6 GCAGAAGTAGTTCAGC..GGT.A...GAATACAACCTTGCCAAGGTTGGG...........GtCGCGGGTTCGAATCCCGT.CTTCTGCTCCA tRNA-Gly-GCC-1-2 Sc: 85.6 >>>>>>>..>>>>.............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGGGTGTAGTTTAAT..GGC.A...AAACCTCAGCCTTCCAAGCTGAT............GtTGTGGGTTCGATTCCCAT.CACCCGCTCCA tRNA-Gly-TCC-1-1 Sc: 79.0 GCGGGTGTAGTTTAAT..GGC.A...AAACCTCAGCCTTCCAAGCTGAT............GtTGTGGGTTCGATTCCCAT.CACCCGCTCCA tRNA-Gly-TCC-1-2 Sc: 79.0 GCGGGAGTAGTTCAACTt..TtA...GAACACGTTCCTTCCCGGAACGAG...........G.TATAGGTGCAAATCCTAT.CTTCCGCTCCA tRNA-Gly-TCC-2-1 Sc: 42.1 GCGGGAGTAGTTCAACTt..TtA...GAACACGTTCCTTCCCGGAACGAG...........G.TATAGGTGTAAATCCTAT.CTTCCGCTCCA tRNA-Gly-TCC-3-1 Sc: 38.1 >>>>>>>...>>>.............<<<..>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGGGAGTATTTCAACTc..TtA...GAATACATTCCTTCCTGGAATGAG...........G.TATAGGTGTAAATCCTAT.CTTCCGCTCCA tRNA-Gly-TCC-4-1 Sc: 27.7
His tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGTTGTGGTGAAGTGGTtA.ACACATCGGATTGTGGTTCCGACA...........TtCGAGGGTTCGATCCCCTTCAGCCGCCCCA tRNA-His-GTG-1-1 Sc: 65.8 GCGGCTGTGGTGAAGTGGTtA.ACACATCGGATTGTGGTTCCGACA...........TtCGAGGGTTCGATCCCCTTCAGCCGCC... tRNA-His-GTG-2-1 Sc: 63.2
Ile tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGGTGGTTCGAGTCCACTTAGGCCCACCA tRNA-Ile-GAT-1-1 Sc: 87.9
Leu tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>............<<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGTCGTGGCGGAAT.GGCaG.ACGCGCTAGGTTGAGGGCCTAGTGGGA..GAAA......TCCCGTGGAGGTTCAAGTCCTCT.CGGCCGCA... tRNA-Leu-GAG-1-1 Sc: 59.6 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>..............<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGGTGTGGCGGAATTGGCaG.ACGCACTAGACTTAGGATCTAGCGCC...TTAC.......GGCGTGGGGGTTCGACTCCCTT.CACCCGCA... tRNA-Leu-TAG-1-1 Sc: 67.8 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>..........<<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGGTGTGGCGGAATTGGCaG.ACGCGCGGGACTCAAAATCCCGTTCCACT........TGTGGAGTGTCGGTTCGACCCCGAC.CACCGGTA... tRNA-Leu-CAA-1-1 Sc: 61.4 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>..........<<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGGGGTGGCGGAACTGGCaG.ACGCACAGGACTTAAAATCCTGCGGTGA.GTGA.....TCACCGTACCGGTTCGATTCCGGT.CCTCGGCACCA tRNA-Leu-TAA-1-1 Sc: 75.6 >>>>.>>..>>>............<<<.>>>>>.......<<<<<.>>>>>..........<<<<<..>>>>>.......<<<<<.<<.<<<<.... GCCG.GGTGGCGGAACTGGCaG.ACGCACAGGACTTAAAATCCTGCGGTGA.GAGA.....TCACCGTACCGGTTCGATTCCGGT.CCTCGGCACCA tRNA-Leu-TAA-2-1 Sc: 63.9
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCAGAGGTTCGAATCCTCTATGGCTCACCA tRNA-Lys-TTT-1-1 Sc: 91.0 GAGCCATTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCAGAGGTTCGAATCCTCTATGGCTCA... tRNA-Lys-TTT-2-1 Sc: 84.1 GAGCCATTAGCTCAGCTGGTAGAGCATCTGACTTTTAATCAGAGG...........GtCAGAGGTTCGAATCCTCTATGGCTCA... tRNA-Lys-TTT-3-1 Sc: 83.1
Met/Ile2 tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCGGTGTAGCTCAGCT.GGCtAGAGCGTACGGTTCATACCCGTGAG...........GtCGGGGGTTCGATCCCCTCCACCGCCA... tRNA-Met-CAT-1-1 Sc: 71.4 .>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGATGGAGCAGTTcGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGGTGGTTCAAATCCGCCTCCCGCAA... tRNA-fMet-CAT-1-1 Sc: 68.8 CGCGGGATGGAGCAGTTcGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGGTGGTTCAAATCCGCCTCCCGCAA... tRNA-fMet-CAT-1-2 Sc: 68.8 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGACCTTTAGCTCAGTT.GGTtAGAGCTAACGGCTCATAACCGTTCG...........GtCGCAGGTTCGAGTCCTGCAAGGTCCA... tRNA-Ile2-CAT-1-1 Sc: 78.6
Phe tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGTTCAGTAGCTCAGTTGGTAGAGCAATGGATTGAAGCTCCATGT...........GtCGGCAGTTCGACTCTGTCCTGAACCA... tRNA-Phe-GAA-1-1 Sc: 69.3 GGTTCAGTAGCTCAGTTGGTAGAGCAATGGATTGAAGCTCCATGT...........GtCGGCAGTTCGACTCTGTCCTGAACCA... tRNA-Phe-GAA-1-2 Sc: 69.3
Pro tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGAAGTAGCTCAGCTtGGTAGAGCACTTGGTTTGGGACCAAGGG...........GtCGCAGGTTCGAATCCTGTCTTCCCGA... tRNA-Pro-TGG-1-1 Sc: 79.9 CGGGAAGTAGCTCAGCTtGGTAGAGCACTTGGTTTGGGACCAAGGG...........GtCGCAGGTTCGAATCCTGTCTTCCCGA... tRNA-Pro-TGG-1-2 Sc: 79.9
SeC tRNAs
Ser tRNAs
>>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGAAGGTTGTCCGAGCT.GGCcgAAGGAGCACGCCTGGAAAGTGTGT.AGGCGTCACAA..GCGTCT.CAAGGGTTCGAATCCCTT..ACCTTCCG... tRNA-Ser-GGA-1-1 Sc: 63.8 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>.>>.........<<.<<..>>>>>.......<<<<<..<<<<<<<.... GGAGGAATACCCAAGTCcGGCtgAAGGGATCGGTCTTGAAAACCGACAGGGCC..TTAAc..GGGCCGCGGGGGTTCGAATCCCTC..TTCCTCCGCCA tRNA-Ser-TGA-1-1 Sc: 80.0 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>>>>>.......<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGGAATACCCAAGTCcGGCtgAAGGGATCGGTCTTGAAAACCGACAGGGGCT.TAAC..GGCTCG.CGGGGGTTCGAATCCCTC..TTCCTCCGCCA tRNA-Ser-TGA-2-1 Sc: 77.8 GGAGGAATACCCAAGTCcGGCtgAAGGGATCGGTCTTGAAAACCGACAGGGGCT.TAAC..GGCTCG.CGGGGGTTCGAATCCCTC..TTCCTCCG... tRNA-Ser-TGA-3-1 Sc: 70.9 >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>>>>>.......<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAAACGTACTCAAGTT.GGCtgAAGAGGCGCCCCTGCTAAGGGTGTAGGTCGC.GAAA..GCGGCG.CGAGGGTTCGAATCCCTC..CGTTTCCG... tRNA-Ser-GCT-1-1 Sc: 74.3
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGGCCTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAG...........GtTGGGGGTTCAAGTCCTCTGGCCGGCACCA tRNA-Thr-TGT-1-1 Sc: 83.5 GCCGGCCTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAG...........GtTGGGGGTTCAAGTCCTCTGGCCGGCACCA tRNA-Thr-TGT-1-2 Sc: 83.5 GCCGGCCTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAG...........GtTGGGGGTTCAAGTCCTCTGGCCGGCACCA tRNA-Thr-TGT-1-3 Sc: 83.5
Trp tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... AGGGGCATAGTTCAACGGTA.GAATAGAGGTCTCCAAAACCTTTG...........GTGTGGGTTCGATTCCTACTGCCCCTGCCA tRNA-Trp-CCA-1-1 Sc: 74.6
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>.........<<<...>>>>>.......<<<<<.<<<<<<<.... GGAGGGGTAGCGAAGTGGCtaA.ACGCGGCGGACTGTAAATCCGCTCCTT.......CGGGTtCGGCAGTTCGAATCTGCC.CCCCTCCACCA tRNA-Tyr-GTA-1-1 Sc: 76.2 GGAGGGGTAGCGAAGTGGCtaA.ACGCGGCGGACTGTAAATCCGCTCCTT.......CGGGTtCGGCAGTTCGAATCTGCC.CTCCTCCA... tRNA-Tyr-GTA-2-1 Sc: 64.3
Val tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGAGAATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCGGCGGTTCGAACCCGTCATTCTCCACCA tRNA-Val-TAC-1-1 Sc: 87.0 GGAGAATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCGGCGGTTCGAACCCGTCATTCTCCACCA tRNA-Val-TAC-1-2 Sc: 87.0 GGAGAATTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCGGCGGTTCGAACCCGTCATTCTCCACCA tRNA-Val-TAC-1-3 Sc: 87.0