tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 58
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 2
Total tRNAs 60
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 2656
Number of Codons: 796380

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
 
CGC
 
TGC
3
3
GCT
2.04
GCC
0.45
GCG
0.94
GCA
3.02
6.45%
GlyACC
 
GCC
2
CCC
 
TCC
5
7
GGT
3.26
GGC
0.93
GGG
0.43
GGA
1.42
6.04%
ProAGG
 
GGG
 
CGG
 
TGG
2
2
CCT
1.07
CCC
0.09
CCG
0.4
CCA
1.63
3.19%
ThrAGT
 
GGT
 
CGT
 
TGT
3
3
ACT
1.68
ACC
0.26
ACG
0.95
ACA
2.89
5.78%
ValAAC
 
GAC
 
CAC
 
TAC
3
3
GTT
2.73
GTC
0.73
GTG
0.94
GTA
2.28
6.68%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
 
TGA
3
ACT
 
GCT
1
 
 
 
 
5
TCT
1.2
TCC
0.16
TCG
0.39
TCA
2.05
AGT
1.68
AGC
0.52
 
 
 
 
6%
ArgACG
2
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
 
TCT
1
4
CGT
1.33
CGC
0.31
CGG
0.04
CGA
0.48
 
 
 
 
AGG
0.14
AGA
1.17
3.47%
LeuAAG
 
GAG
1
CAG
 
TAG
1
 
 
 
 
CAA
1
TAA
2
5
CTT
1.07
CTC
0.2
CTG
0.23
CTA
0.85
 
 
 
 
TTG
1.34
TTA
5.38
9.07%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
3.23
TTC
1.19
 
 
 
 
4.42%
AsnATT
 
GTT
3
 
 
 
 
3
AAT
4.32
AAC
1.36
 
 
 
 
5.68%
Lys 
 
 
 
CTT
 
TTT
3
3
 
 
 
 
AAG
1.43
AAA
6.14
7.57%
AspATC
 
GTC
4
 
 
 
 
4
GAT
4.58
GAC
1.28
 
 
 
 
5.86%
Glu 
 
 
 
CTC
 
TTC
3
3
 
 
 
 
GAG
1.05
GAA
5.48
6.53%
HisATG
 
GTG
2
 
 
 
 
2
CAT
1.84
CAC
0.45
 
 
 
 
2.29%
Gln 
 
 
 
CTG
 
TTG
2
2
 
 
 
 
CAG
0.51
CAA
3.66
4.17%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
5.22
ATC
1.48
 
 
ATA
1.85
8.55%
fMet/Met 
 
 
 
CAT
2/1
 
 
3
 
 
 
 
ATG
2.58
 
 
2.58%
TyrATA
 
GTA
2
 
 
 
 
2
TAT
3
TAC
0.85
 
 
 
 
3.85%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.04
TAG
0.05
TAA
0.25
0.34%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.4
TGC
0.12
 
 
 
 
0.52%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.75
 
 
0.75%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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