Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... tRNA-Ala-TGC-1-1 Sc: 74.9 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... tRNA-Ala-TGC-1-2 Sc: 74.9 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... tRNA-Ala-TGC-1-3 Sc: 74.9 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... tRNA-Ala-TGC-1-4 Sc: 74.9
Arg tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCACCCTTAGCTCAACTGGAtA.GAGTACCTGACTACGAATCAGGCG...........GtTAGAGGTTCGACTCCTCT.AGGGTGCA... tRNA-Arg-ACG-1-1 Sc: 73.4 GCACCCTTAGCTCAACTGGAtA.GAGTACCTGACTACGAATCAGGCG...........GtTAGAGGTTCGACTCCTCT.AGGGTGCA... tRNA-Arg-ACG-1-2 Sc: 73.4 GCACCCTTAGCTCAACTGGAtA.GAGTACCTGACTACGAATCAGGCG...........GtTAGAGGTTCGACTCCTCT.AGGGTGCA... tRNA-Arg-ACG-1-3 Sc: 73.4 >>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... CCACCCTTAGTGTAAT.GGAtA.TCACGTAAGATTCCGGTTCTTGAG...........A.TGGGAGTTCGATTCTCTC.AGGGTGGA... tRNA-Arg-CCG-1-1 Sc: 48.8 >>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GTCCCCTTAGTTCAAT.GGAtA.TAACAACTCCCTCCTAAGGAGTA............GtTGCTGGTTCGATTCCGGC.AGGGGACA... tRNA-Arg-CCT-1-1 Sc: 60.2 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GGTCTCATAGCTCAGCTGGAtA.GAGCATTCGCCTTCTAAGCGAACG...........GtCGCAGGTTCGAATCCTGC.TGGGATCA... tRNA-Arg-TCT-1-1 Sc: 73.2
Asn tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCGGCATAGCTCAGTTGGTaGTAGCGCATGACTGTTAATCATGAT...........GtCGTAGGTTCGAGTCCTACTGCCGGAG... tRNA-Asn-GTT-1-1 Sc: 70.4 TCCGGCATAGCTCAGTTGGTaGTAGCGCATGACTGTTAATCATGAT...........GtCGTAGGTTCGAGTCCTACTGCCGGAG... tRNA-Asn-GTT-1-2 Sc: 70.4
Asp tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGTCCCGTAGTGTAGCGGTtA.TCACGTCGCCCTGTCACGGCGAAG...........AtCGCGGGTTCGATTCCCGTCGGGACCG... tRNA-Asp-GTC-1-1 Sc: 71.6 GGTCCCGTAGTGTAGCGGTtA.TCACGTCGCCCTGTCACGGCGAAG...........AtCGCGGGTTCGATTCCCGTCGGGACCG... tRNA-Asp-GTC-1-2 Sc: 71.6
Cys tRNAs
>>>>>>>..>>>..........<<<..>>>>.......<<<<................>.>>>.......<<<.<.<<<<<<<.... GGCGGTATAGCCAAGTGGTA.AGGCACGGCTCTGCAAAAGCTTG...........AtCGTCGGTTCAAATCCGTC.TACCGCCT... tRNA-Cys-GCA-1-1 Sc: 58.5
Gln tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGGTATAGCCAAGCGGTA.AGGCAAGGGACTTTGACTCCCTCA...........TgCGTTGGTTCGAATCCAGCTACCCCAG... tRNA-Gln-TTG-1-1 Sc: 65.2 TGGGGTATAGCCAAGCGGTA.AGGCAAGGGACTTTGACTCCCTCA...........TgCGTTGGTTCGAATCCAGCTACCCCAG... tRNA-Gln-TTG-1-2 Sc: 65.2
Glu tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGTCCGTTGGTCAAGGGGTtA.AGACACCGCCTTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGACTA... tRNA-Glu-TTC-1-1 Sc: 65.3 GGTCCGTTGGTCAAGGGGTtA.AGACACCGCCTTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGACTA... tRNA-Glu-TTC-1-2 Sc: 65.3
Gly tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGAACGTAGTTCAGTGGTA.GAACATCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAACCCCGT.CGTTCGCT... tRNA-Gly-GCC-1-1 Sc: 75.9 GCGAACGTAGTTCAGTGGTA.GAACATCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAACCCCGT.CGTTCGCT... tRNA-Gly-GCC-1-2 Sc: 75.9 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCGGGTGTAGTTTAGTGGTA.AAACTACAGCCTTCCAAGCTGTT............GtCGCGAGTTCGATTCTCGT.CACCCGCT... tRNA-Gly-TCC-1-1 Sc: 73.8 GCGGGTGTAGTTTAGTGGTA.AAACTACAGCCTTCCAAGCTGTT............GtCGCGAGTTCGATTCTCGT.CACCCGCT... tRNA-Gly-TCC-1-2 Sc: 73.8
His tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGTGTGGTGAAGTGGTtA.ACACACCAGATTGTGGCTCTGGCA...........TgCGTGGGTTCGATCCCCATCACTCGCC... tRNA-His-GTG-1-1 Sc: 59.8
Ile tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGCGTAGCTCAGGTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGGTGGTTCGAGTCCACTCGTGCCCA... tRNA-Ile-GAT-1-1 Sc: 76.2 GGGCGCGTAGCTCAGGTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGGTGGTTCGAGTCCACTCGTGCCCA... tRNA-Ile-GAT-1-2 Sc: 76.2
Leu tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>.............<<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGGGATGGCGGAATTGGCaG.ACGCGCAGGACTAAGGATCCTGTGACCGCT.......TTAGGTCGTGAGGGTTCAAGTCCCTC.TCTCCGCA... tRNA-Leu-AAG-1-1 Sc: 63.7 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>.............<<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGAAATGGCGGAAC.GGCaG.ACGCGCATGCTTCAGGCGCATGTGTCCAT.........TCGGACGTGAGGGTTCAAATCCCTT.TTTCCGCA... tRNA-Leu-CAG-1-1 Sc: 63.9 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>...............<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGGTGTGGCGGAATTGGCaG.ACGCACCAGATTTAGGATCTGGCGCT....TAAC.......GGCGTGGGGGTTCAAGTCCCTT.CACCCGCA... tRNA-Leu-TAG-1-1 Sc: 64.7 GCGGGTGTGGCGGAATTGGCaG.ACGCACCAGATTTAGGATCTGGCGCT....TAAC.......GGCGTGGGGGTTCAAGTCCCTT.CACCCGCA... tRNA-Leu-TAG-1-2 Sc: 64.7 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>.............<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGGCGTGGCGGAATTGGCaG.ACGCGCTGGACTCAAAATCCAGTGTCC...TCAC......GGACGTGCCGGTTCGACCCCGGC.CGCCGGTA... tRNA-Leu-CAA-1-1 Sc: 69.0 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>...........<<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGGGGTGGCGGAACTGGCaG.ACGCACAGGACTTAAAATCCTGCGATTG..GAAA.....CAATCGTACCGGTTCGATTCCGGT.CCTCGGCA... tRNA-Leu-TAA-1-1 Sc: 69.7 GCCGGGGTGGCGGAACTGGCaG.ACGCACAGGACTTAAAATCCTGCGATTG..GAAA.....CAATCGTACCGGTTCGATTCCGGT.CCTCGGCA... tRNA-Leu-TAA-1-2 Sc: 69.7
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCTCCTTAGCTCAGTTGGTAGAGCAGTGGACTCTTAATCCATGG...........GtCACAGGTTCGAGCCCTGTAGGGGGCA... tRNA-Lys-CTT-1-1 Sc: 77.2 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GACTCGTTAGCTCAGTTGGTAGAGCATTTGACTTTTAATCAAAGG...........GtCACTGGTTCGAGCCCAGTACGGGTCA... tRNA-Lys-TTT-1-1 Sc: 73.7 GACTCGTTAGCTCAGTTGGTAGAGCATTTGACTTTTAATCAAAGG...........GtCACTGGTTCGAGCCCAGTACGGGTCA... tRNA-Lys-TTT-1-2 Sc: 73.7
Met/Ile2 tRNAs
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGATGGAGCAGCTaGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCTCCCGCAA... tRNA-fMet-CAT-1-1 Sc: 71.8 CGCGGGATGGAGCAGCTaGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCTCCCGCAA... tRNA-fMet-CAT-1-2 Sc: 71.8 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCGGTGTAGCTCAGCT.GGCtAGAGCGTCCGGTTCATACCCGGGAG...........GtCGGGGGTTCGATCCCCTTCGCCGCTA... tRNA-Met-CAT-1-1 Sc: 67.4 GGACCTTTAGCTCAGCT.GGTtAGAGCTCTCGGCTCATAACCGAGTG...........GtCGTAGGTTCAAGTCCTACAAGGTCCA... tRNA-Ile2-CAT-1-1 Sc: 78.5
Phe tRNAs
>>>.>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<.<<<.... GGCTCGGTAGCTCAGTTGGTAGAGCAATGGATTGAAGCTCCATGT...........GtCGGCGGTTCGATTCCGTCTCGCGCCA... tRNA-Phe-GAA-1-1 Sc: 68.3 GGCTCGGTAGCTCAGTTGGTAGAGCAATGGATTGAAGCTCCATGT...........GtCGGCGGTTCGATTCCGTCTCGCGCCA... tRNA-Phe-GAA-1-2 Sc: 68.3
Pro tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGAAGTAGCTCAGCTtGGTAGAGTACTTGGTTTGGGACCAAGGT...........GtCGCAGGTTCGAATCCTGTCTTCCCGA... tRNA-Pro-TGG-1-1 Sc: 73.3 CGGGAAGTAGCTCAGCTtGGTAGAGTACTTGGTTTGGGACCAAGGT...........GtCGCAGGTTCGAATCCTGTCTTCCCGA... tRNA-Pro-TGG-1-2 Sc: 73.3
SeC tRNAs
Ser tRNAs
>>>>>>>..>>>..............<<<.>>>>>.......<<<<<..>.>>.>......<.<<.<..>>>>>.......<<<<<..<<<<<<<.... GGAAGATTACTCAAGA..GGCttA.AGAGGCTGTGTTGGAAACGCAGT.AGGCGT.GTGA.AAGCGTGCGTGGGTTCGAATCCCAT..GTCTTCCG... tRNA-Ser-GGA-1-1 Sc: 51.4 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>>>....<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAAAGGTGGCCCAGCTtGGT..A.CGGCACCGGACTCGAAATCCGGCAAATGGATTTT.ATTCATG.CGCGGGTTCAAATCCCGT..CCTTTCCT... tRNA-Ser-CGA-1-1 Sc: 67.2 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<..>.>>.>......<.<<.<..>>>>>.......<<<<<..<<<<<<<.... GGAGGATTACCCAAGTCcGGCtgA.AGGGAACGGTCTTGAAAACCGTC.AGGCGT.GTAA.AAGCGTGCGTGGGTTCGAATCCCAC..ATCCTCCT... tRNA-Ser-TGA-1-1 Sc: 70.4 GGAGGATTACCCAAGTCcGGCtgA.AGGGAACGGTCTTGAAAACCGTC.AGGCGT.GTAA.AAGCGTGCGTGGGTTCGAATCCCAC..ATCCTCCT... tRNA-Ser-TGA-1-2 Sc: 70.4 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>>......<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGAATTACTCAAGA..GGCtgA.AGAGGACGGTTTGCTAAATCGTTAGGTCGG.GTGA.CTGGCG.CGGGGGTTCGAATCCCCC..ATTCTCCG... tRNA-Ser-GCT-1-1 Sc: 70.4
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTGATTTAGCTCAGTTGGCAGAGCGCATCCATGGTAAGGATGAG...........GtCGCCGGTTCGATCCCGGCAATTAGCA... tRNA-Thr-GGT-1-1 Sc: 68.4 >>>>>>>..>>>>........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGATTTAGCTCAGTTGGTAGAGCAACGCACTCGTAACGCGTAG...........GtCGTAGGTTCAAGCCCTATAATCGGCA... tRNA-Thr-CGT-1-1 Sc: 73.7 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCGGCTTAGCTCAGTTGGTAGAGCATCTGATTTGTAATCAGAGG...........GtCGCGTGTTCAAGTCATGTAGCCGGCA... tRNA-Thr-TGT-1-1 Sc: 76.3 GCCGGCTTAGCTCAGTTGGTAGAGTATCTGATTTGTAATCAGAGG...........GtCGCGTGTTCAAGTCATGTAGCCGGCA... tRNA-Thr-TGT-2-1 Sc: 73.0
Trp tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... ACGGGCATAGTTTAAAGGTA.GAACTAAGGTCTCCAAAACCTTCA...........GTGTGGGTTCAATTCCTACTGCCCGTG... tRNA-Trp-CCA-1-1 Sc: 57.8
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>.........<<<...>>>>>.......<<<<<.<<<<<<<.... GGAGAGGTAGCGAAGAGGCtaA.ACGCGGCGGACTGTAAATCCGCTCCTT.......CGGGTtCGGGGGTTCGAATCCCTC.CCTCTCCA... tRNA-Tyr-GTA-1-1 Sc: 68.4 GGAAGGGTAGCGAAGAGGCtaA.ACGCGGCGGACTGTAAATCCGCTCCTT.......CGGGTtCGGGGGTTCGAATCCCTC.CCCTTCCA... tRNA-Tyr-GTA-2-1 Sc: 67.2
Val tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGAGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCAGCGGTTCGATCCCGTTAACTCCCA... tRNA-Val-TAC-1-1 Sc: 75.2 GGGAGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCAGCGGTTCGATCCCGTTAACTCCCA... tRNA-Val-TAC-1-2 Sc: 75.2 GGGAGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCAGCGGTTCGATCCCGTTAACTCCCA... tRNA-Val-TAC-1-3 Sc: 75.2