Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... tRNA-Ala-TGC-1-1 Sc: 74.9 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... tRNA-Ala-TGC-1-2 Sc: 74.9 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... tRNA-Ala-TGC-1-3 Sc: 74.9 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... tRNA-Ala-TGC-1-4 Sc: 74.9 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTAGGCTCCA... tRNA-Ala-TGC-1-5 Sc: 74.9
Arg tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCACCCTTGGCTCAACTGGAtA.GAGTACCTGACTACGAATCAGGCG...........GtTGCAGGTTCGAATCCTGC.AGGGTGCA... tRNA-Arg-ACG-1-1 Sc: 78.9 GCACCCTTGGCTCAACTGGAtA.GAGTACCTGACTACGAATCAGGCG...........GtTGCAGGTTCGAATCCTGC.AGGGTGCA... tRNA-Arg-ACG-1-2 Sc: 78.9 >>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... CCACCTTTAGTGTAAT.GGAtA.TCACGTAAGATTCCGGTTCTTGAG...........A.TGGGGGTTCGATTCCCTC.AAGGTGGA... tRNA-Arg-CCG-1-1 Sc: 50.6 >>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<.<<<<<<<.... GTCCCCTTAGTTAAAT.GGAtA.TAACATCTCCCTCCTAAGGAGCA............GtTGCTGGTTCGATTCCGGC.AGGGGATA... tRNA-Arg-CCT-1-1 Sc: 51.0 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GGTCTCATAGCTCAGCTGGAtA.GAGCATTCGCCTTCTAAGCGAACG...........GtCGCAGGTTCGAATCCTGC.TGGGATCA... tRNA-Arg-TCT-1-1 Sc: 73.2
Asn tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCGGCATAGCTCAGTTGGTaGTAGCGCATGACTGTTAATCATGAT...........GtCGTAGGTTCGAGTCCTACTGCCGGAG... tRNA-Asn-GTT-1-1 Sc: 70.4 TCCGGCATAGCTCAGTTGGTaGTAGCGCATGACTGTTAATCATGAT...........GtCGTAGGTTCGAGTCCTACTGCCGGAG... tRNA-Asn-GTT-1-2 Sc: 70.4
Asp tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGTCCCGTGGTGTAGCGGTtA.TCACGTCGCCCTGTCACGGCGAAG...........AtCGCGGGTTCGATTCCCGTCGGGACCG... tRNA-Asp-GTC-1-1 Sc: 70.6 GGTCCCGTGGTGTAGCGGTtA.TCACGTCGCCCTGTCACGGCGAAG...........AtCGCGGGTTCGATTCCCGTCGGGACCG... tRNA-Asp-GTC-1-2 Sc: 70.6 GGTCCCGTGGTGTAGCGGTtA.TCACGTCGCCCTGTCACGGCGAAG...........AtCGCGGGTTCGATTCCCGTCGGGACCG... tRNA-Asp-GTC-1-3 Sc: 70.6
Cys tRNAs
>>>>>>>..>>>..........<<<..>>>>.......<<<<................>.>>>.......<<<.<.<<<<<<<.... GGCGGTATAGCCAAGTGGTA.AGGCACGGCTCTGCAAAAGCTTG...........AtCGTCGGTTCAAATCCGTC.TACCGCCT... tRNA-Cys-GCA-1-1 Sc: 58.5
Gln tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGGTATAGCCAAGCGGTA.AGGCAAGGGACTTTGACTCCCTCA...........TgCGTTGGTTCGAATCCAGCTACCCCAG... tRNA-Gln-TTG-1-1 Sc: 65.2 TGGGGTATAGCCAAGCGGTA.AGGCAAGGGACTTTGACTCCCTCA...........TgCGTTGGTTCGAATCCAGCTACCCCAG... tRNA-Gln-TTG-1-2 Sc: 65.2
Glu tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGTCCGTTGGTCAAGGGGTtA.AGACACCGCCTTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGACTA... tRNA-Glu-TTC-1-1 Sc: 65.3 GGTCCGTTGGTCAAGGGGTtA.AGACACCGCCTTTTCACGGCGGTA...........ACACGGGTTCGAATCCCGTACGGACTA... tRNA-Glu-TTC-1-2 Sc: 65.3
Gly tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<..<<<<<<<.... GCGAACGTAGTTCAGTGGTA.GAACATCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAATCCCGT..CGTTCGCT... tRNA-Gly-GCC-1-1 Sc: 79.5 GCGAACGTAGTTCAGTGGTA.GAACATCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAATCCCGT..CGTTCGCT... tRNA-Gly-GCC-1-2 Sc: 79.5 >>>>.....>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<.....<<<<.... ACGT....AGTTCAGTGGTA.GAACATCACCTTGCCAAGGTGGGG...........GtCGCGGGTTCGAATCCTAT.....ACGTA... tRNA-Gly-GCC-2-1 Sc: 44.5 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<..<<<<<<<.... GCGGGTGTAGTTTAGTGGTA.AAACTACAGCCTTCCAAGCTGTT............GtCGCGAGTTCGATTCTCGT..CACCCGCT... tRNA-Gly-TCC-1-1 Sc: 73.8 GCGGGTGTAGTTTAGTGGTA.AAACTACAGCCTTCCAAGCTGTT............GtCGCGAGTTCGATTCTCGT..CACCCGCT... tRNA-Gly-TCC-1-2 Sc: 73.8
His tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGTGTGGTGAAGTGGTtA.ACACACCAGATTGTGGCTCTGGCA...........TgCGTGGGTTCGATCCCCATCACTCGCC... tRNA-His-GTG-1-1 Sc: 59.8
Ile tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGCGTAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGGTGGTTCGAGTCCACTCGTGCCCA... tRNA-Ile-GAT-1-1 Sc: 78.8 GGGCGCGTAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAG...........GtCGGTGGTTCGAGTCCACTCGTGCCCA... tRNA-Ile-GAT-1-2 Sc: 78.8
Leu tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>...........<<<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGGGATGGCGGAATTGGCaG.ACGCGCAAGACTAAGGATCTTGTGACCGCT.......TTTGGTCGTGAGGGTTCAAGTCCCTC.TCTCCGCA... tRNA-Leu-AAG-1-1 Sc: 64.0 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>.............<<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGAGATGGTGGAAC.GGCaG.ACACGCATGCTTCAGGCGCATGTGCTC...GTAT......GAGCGTGAGGGTTCAAATCCCTT.TCTCCGCA... tRNA-Leu-CAG-1-1 Sc: 64.9 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>...............<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGGTGTGGCGGAATTGGCaG.ACGCACCAGATTTAGGATCTGGCGCT....TAAG.......GGCGTGGGGGTTCAAGTCCCTT.CACCCGCA... tRNA-Leu-TAG-1-1 Sc: 65.7 GCGGGTGTGGCGGAATTGGCaG.ACGCACCAGATTTAGGATCTGGCGCT....TAAG.......GGCGTGGGGGTTCAAGTCCCTT.CACCCGCA... tRNA-Leu-TAG-1-2 Sc: 65.7 GCGGGTGTGGCGGAATTGGCaG.ACGCACCAGATTTAGGATCTGGCGCT....TAAG.......GGCGTGGGGGTTCAAGTCCCTT.CACCCGCA... tRNA-Leu-TAG-1-3 Sc: 65.7 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>.............<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGGCGTGGCGGAATTGGCaG.ACGCGCTGGACTCAAAATCCAGTGTCC...GCAA......GGACGTGCCGGTTCGACCCCGGC.CGCCGGTA... tRNA-Leu-CAA-1-1 Sc: 72.7 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>...........<<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCGGGGTGGCGGAACTGGCaG.ACGCACAGGACTTAAAATCCTGCGAAGG..GGAA.....CCTTCGTACCGGTTCGATTCCGGT.CCTCGGCA... tRNA-Leu-TAA-1-1 Sc: 69.4 GCCGGGGTGGCGGAACTGGCaG.ACGCACAGGACTTAAAATCCTGCGAAGG..GGAA.....CCTTCGTACCGGTTCGATTCCGGT.CCTCGGCA... tRNA-Leu-TAA-1-2 Sc: 69.4
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CCTTCCTTAGCTCAGTTGGTAGAGCAGTGGACTCTTAATCCATGG...........GtCGTAGGTTCGAGCCCTACAGGGAGGA... tRNA-Lys-CTT-1-1 Sc: 71.6 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GACTCGTTAGCTCAGTTGGTAGAGCATTTGACTTTTAATCAAAGG...........GtCACTGGTTCGAGCCCAGTACGGGTCA... tRNA-Lys-TTT-1-1 Sc: 73.7 GACTCGTTAGCTCAGTTGGTAGAGCATTTGACTTTTAATCAAAGG...........GtCACTGGTTCGAGCCCAGTACGGGTCA... tRNA-Lys-TTT-1-2 Sc: 73.7 GACTCGTTAGCTCAGTTGGTAGAGCATTTGACTTTTAATCAAAGG...........GtCACTGGTTCGAGCCCAGTACGGGTCA... tRNA-Lys-TTT-1-3 Sc: 73.7
Met/Ile2 tRNAs
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGATGGAGCAGTTaGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCTCCCGCAA... tRNA-fMet-CAT-1-1 Sc: 72.7 CGCGGGATGGAGCAGTTaGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCTCCCGCAA... tRNA-fMet-CAT-1-2 Sc: 72.7 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCGGTGTAGCTCAGCT.GGCtAGAGCGTCCGGTTCATACCCGGGAG...........GtCGGGGGTTCGATCCCCTTCGCCGCTA... tRNA-Met-CAT-1-1 Sc: 67.4 GGACCTTTAGCTCAGCT.GGTtAGAGCACTCGGCTCATAACCGAGCG...........GtCGTAGGTTCGAGTCCTACAAGGTCCA... tRNA-Ile2-CAT-1-1 Sc: 83.8
Phe tRNAs
>>>.>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<.<<<.... GGCTCGGTAGCTCAGTTGGTAGAGCAATGGATTGAAGCTCCATGT...........GtCGGCGGTTCGATTCCGTCTCGCGCCA... tRNA-Phe-GAA-1-1 Sc: 68.3 GGCTCGGTAGCTCAGTTGGTAGAGCAATGGATTGAAGCTCCATGT...........GtCGGCGGTTCGATTCCGTCTCGCGCCA... tRNA-Phe-GAA-1-2 Sc: 68.3
Pro tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGAAGTAGCTCAGCTtGGTAGAGTACTTGGTTTGGGACCAAGGG...........GtCGCAGGTTCGAATCCTGTCTTCCCGA... tRNA-Pro-TGG-1-1 Sc: 76.6 CGGGAAGTAGCTCAGCTtGGTAGAGTACTTGGTTTGGGACCAAGGG...........GtCGCAGGTTCGAATCCTGTCTTCCCGA... tRNA-Pro-TGG-1-2 Sc: 76.6
SeC tRNAs
Ser tRNAs
>>>>>>>..>>>>............<<<<.>>>>>.......<<<<<...>>>...........<<<....>>>>>.......<<<<<..<<<<<<<.... GGAGAGGTCGCATAGT..GGCtgA.GTGCGCACGCTTGGAAAGCGTGTAGTCC...TTAAc...GGGGCtCGGGGGTTCGAATCCCCT..CCTCTCCT... tRNA-Ser-GGA-1-1 Sc: 68.1 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>>>.....<<<<<<....>>>>>.......<<<<<..<<<<<<<.... GGAAAGGTGGCTCAGCTtGGT..A.CAGCACCGGACTCGAAATCCGGCAAGTGGACATT..GTTCATG..CGCGGGTTCAAATCCCGT..CCTTTCCT... tRNA-Ser-CGA-1-1 Sc: 63.9 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<..>.>>.>.......<.<<.<...>>>>>.......<<<<<..<<<<<<<.... GGAGGATTACCCAAGTCcGGCtgA.AGGGAACGGTCTTGAAAACCGTC.AGGCGT.GTAA..AAGCGTG.CGTGGGTTCGAATCCCAC..ATCCTCCT... tRNA-Ser-TGA-1-1 Sc: 70.4 GGAGGATTACCCAAGTCcGGCtgA.AGGGAACGGTCTTGAAAACCGTC.AGGCGT.GTAA..AAGCGTG.CGTGGGTTCGAATCCCAC..ATCCTCCT... tRNA-Ser-TGA-1-2 Sc: 70.4 >>>>>>>..>>>..............<<<.>>>>>.......<<<<<...>>>>>.......<<<<<....>>>>>.......<<<<<..<<<<<<<.... GGAGAATTACTCAAGA..GGCtgA.AGAGGACGGTTTGCTAAATCGTTAGGTCGG.GAAA..CCGGCG..CGGGGGTTCGAATCCCCC..ATTCTCCG... tRNA-Ser-GCT-1-1 Sc: 72.1
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCCGCTATAGTTAAAT.GGTA.TAATAGAGCAATGGTAATGCTCC............GtTCCGAGTTCGATTCTCGG.TGGTGGCA... tRNA-Thr-GGT-1-1 Sc: 50.4 >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.................>>>>.......<<<<..<<<<<<<.... GCCGATTTAGCTCAGCTGGTA.GAGCAACGCACTCGTAACGCGTAG...........GtCACAGGTTCAAGTCCTGC.AATCGGCA... tRNA-Thr-CGT-1-1 Sc: 69.3 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... GCCGGCTTAGCTCAGTTGGTA.GAGCATCTGATTTGTAATCAGAGG...........GtCGCGTGTTCAAGTCATGT.AGCCGGCA... tRNA-Thr-TGT-1-1 Sc: 76.3 GCCGGCTTAGCTCAGTTGGTA.GAGCATCTGATTTGTAATCAGAGG...........GtCGCGTGTTCAAGTCATGT.AGCCGGCA... tRNA-Thr-TGT-1-2 Sc: 76.3 GCCGGCTTAGCTCAGTTGGTA.GAGCATCTGATTTGTAATCAGAGG...........GtCGCGTGTTCAAGTCATGT.AGCCGGCA... tRNA-Thr-TGT-1-3 Sc: 76.3
Trp tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... ACGGGCATAGTTTAAAGGTA.GAACTAAGGTCTCCAAAACCTTCA...........GTGTGGGTTCAATTCCTACTGCCCGTG... tRNA-Trp-CCA-1-1 Sc: 57.8
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>.........<<<...>>>>>.......<<<<<.<<<<<<<.... GGAAGGGTAGCGAAGAGGCtaA.ACGCGGCGGACTGTAAATCCGCTCCTT.......CGGGTtCGGGGGTTCGAATCCCTC.CCCTTCCA... tRNA-Tyr-GTA-1-1 Sc: 67.2 GGAAGGGTAGCGAAGAGGCtaA.ACGCGGCGGACTGTAAATTCGCTCCTT.......CGGGTtCGGGGGTTCGAATCCCTC.CCCTTCCA... tRNA-Tyr-GTA-2-1 Sc: 63.4
Val tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGAGTTTAGCTCAGTTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCAGCGGTTCGAGCCCGTTAACTCCCA... tRNA-Val-TAC-1-1 Sc: 76.2 GGGAGTTTAGCTCAGTTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCAGCGGTTCGAGCCCGTTAACTCCCA... tRNA-Val-TAC-1-2 Sc: 76.2 GGGAGTTTAGCTCAGTTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCAGCGGTTCGAGCCCGTTAACTCCCA... tRNA-Val-TAC-1-3 Sc: 76.2 GGGAGTTTAGCTCAGTTGGGAGAGCATCTGCCTTACAAGCAGAGG...........GtCAGCGGTTCGAGCCCGTTAACTCCCA... tRNA-Val-TAC-1-4 Sc: 76.2