tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results (on host hoag.soe.ucsc.edu)
Started: Fri Aug  4 01:23:51 PDT 2017

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Search Mode:                       Bacterial
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-bact.cm
                                   TRNAinf-bact-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1
Seqs w/at least 1 hit:  1
Bases read:             2015626 (x2 for both strands)
Bases in tRNAs:         5007
tRNAs predicted:        66
Av. tRNA length:        75
Script CPU time:        0.29 s
Scan CPU time:          7.75 s
Scan speed:             520.2 Kbp/sec

First pass search(es) ended: Fri Aug  4 01:23:52 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     66
Infernal-confirmed tRNAs:     65
Bases scanned by Infernal:  6327
% seq scanned by Infernal:  0.2 %
Script CPU time:          0.39 s
Infernal CPU time:            44.89 s
Scan speed:               140.9 bp/sec

Infernal analysis of tRNAs ended: Fri Aug  4 01:24:32 PDT 2017

Overall scan speed: 75604.9 bp/sec