tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 65
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 65
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 1921
Number of Codons: 578484

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
 
CGC
 
TGC
5
5
GCT
3.72
GCC
1.24
GCG
0.61
GCA
1.96
7.53%
GlyACC
 
GCC
3
CCC
 
TCC
2
5
GGT
2.76
GGC
1.18
GGG
0.64
GGA
1.72
6.3%
ProAGG
 
GGG
 
CGG
 
TGG
2
2
CCT
1.37
CCC
0.35
CCG
0.4
CCA
1.06
3.18%
ThrAGT
 
GGT
1
CGT
1
TGT
3
5
ACT
1.94
ACC
1.01
ACG
0.72
ACA
2.01
5.68%
ValAAC
 
GAC
 
CAC
 
TAC
4
4
GTT
3.48
GTC
1.23
GTG
0.9
GTA
1.03
6.64%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
2
ACT
 
GCT
1
 
 
 
 
5
TCT
1.7
TCC
0.51
TCG
0.33
TCA
1.43
AGT
1.51
AGC
0.73
 
 
 
 
6.21%
ArgACG
2
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
5
CGT
1.65
CGC
0.66
CGG
0.23
CGA
0.38
 
 
 
 
AGG
0.25
AGA
0.72
3.89%
LeuAAG
1
GAG
 
CAG
1
TAG
3
 
 
 
 
CAA
1
TAA
2
8
CTT
2.43
CTC
0.78
CTG
1
CTA
0.78
 
 
 
 
TTG
2.16
TTA
3.02
10.17%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
3.75
TTC
0.95
 
 
 
 
4.7%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
3.84
AAC
0.95
 
 
 
 
4.79%
Lys 
 
 
 
CTT
1
TTT
3
4
 
 
 
 
AAG
2.25
AAA
5.04
7.29%
AspATC
 
GTC
3
 
 
 
 
3
GAT
4.49
GAC
1.14
 
 
 
 
5.63%
Glu 
 
 
 
CTC
 
TTC
2
2
 
 
 
 
GAG
1.45
GAA
4.88
6.33%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.53
CAC
0.44
 
 
 
 
1.97%
Gln 
 
 
 
CTG
 
TTG
2
2
 
 
 
 
CAG
1.32
CAA
2.73
4.05%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
2
CAT
1
TAT
 
3
ATT
5.31
ATC
1.61
 
 
ATA
0.76
7.68%
fMet/Met 
 
 
 
CAT
2/1
 
 
3
 
 
 
 
ATG
2.38
 
 
2.38%
TyrATA
 
GTA
2
 
 
 
 
2
TAT
2.9
TAC
0.82
 
 
 
 
3.72%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.07
TAG
0.06
TAA
0.2
0.33%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.4
TGC
0.17
 
 
 
 
0.57%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.88
 
 
0.88%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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