tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 67
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 67
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 1550
Number of Codons: 481597

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
 
CGC
 
TGC
6
6
GCT
3.6
GCC
1.46
GCG
0.69
GCA
2.1
7.85%
GlyACC
 
GCC
2
CCC
 
TCC
2
4
GGT
2.62
GGC
1.19
GGG
0.86
GGA
1.78
6.45%
ProAGG
 
GGG
 
CGG
 
TGG
3
3
CCT
1.35
CCC
0.31
CCG
0.27
CCA
1.45
3.38%
ThrAGT
 
GGT
1
CGT
 
TGT
3
4
ACT
1.84
ACC
1.36
ACG
0.7
ACA
1.94
5.84%
ValAAC
 
GAC
 
CAC
 
TAC
4
4
GTT
2.95
GTC
1.28
GTG
1.36
GTA
1.18
6.77%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
 
TGA
1
ACT
 
GCT
1
 
 
 
 
3
TCT
1.5
TCC
0.47
TCG
0.32
TCA
1.6
AGT
1.4
AGC
0.77
 
 
 
 
6.06%
ArgACG
4
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
7
CGT
1.66
CGC
0.67
CGG
0.22
CGA
0.48
 
 
 
 
AGG
0.24
AGA
0.68
3.95%
LeuAAG
1
GAG
 
CAG
 
TAG
3
 
 
 
 
CAA
1
TAA
2
7
CTT
2.17
CTC
0.78
CTG
0.67
CTA
1.13
 
 
 
 
TTG
2.25
TTA
3.29
10.29%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
3.46
TTC
0.97
 
 
 
 
4.43%
AsnATT
 
GTT
3
 
 
 
 
3
AAT
2.89
AAC
1.38
 
 
 
 
4.27%
Lys 
 
 
 
CTT
1
TTT
3
4
 
 
 
 
AAG
1.77
AAA
5.08
6.85%
AspATC
 
GTC
3
 
 
 
 
3
GAT
3.98
GAC
1.7
 
 
 
 
5.68%
Glu 
 
 
 
CTC
 
TTC
3
3
 
 
 
 
GAG
1.66
GAA
4.66
6.32%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.4
CAC
0.69
 
 
 
 
2.09%
Gln 
 
 
 
CTG
 
TTG
2
2
 
 
 
 
CAG
1.18
CAA
3.11
4.29%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
3
CAT
1
TAT
 
4
ATT
4.8
ATC
1.91
 
 
ATA
0.71
7.42%
fMet/Met 
 
 
 
CAT
2/1
 
 
3
 
 
 
 
ATG
2.55
 
 
2.55%
TyrATA
 
GTA
2
 
 
 
 
2
TAT
2.4
TAC
1.24
 
 
 
 
3.64%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.05
TAG
0.07
TAA
0.21
0.33%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.4
TGC
0.18
 
 
 
 
0.58%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.81
 
 
0.81%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
-