tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 71
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 5
Total tRNAs 77
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 7356
Number of Codons: 2387514

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
4
CGC
1
TGC
1
6
GCT
0.25
GCC
8.27
GCG
4.79
GCA
0.42
13.73%
GlyACC
 
GCC
3
CCC
2
TCC
2
7
GGT
0.72
GGC
6.35
GGG
1.72
GGA
0.66
9.45%
ProAGG
 
GGG
2
CGG
1
TGG
1
4
CCT
0.13
CCC
2.61
CCG
3.28
CCA
0.08
6.1%
ThrAGT
 
GGT
2
CGT
1
TGT
1
4
ACT
0.09
ACC
4.06
ACG
1.97
ACA
0.1
6.22%
ValAAC
 
GAC
4
CAC
2
TAC
1
7
GTT
0.11
GTC
5.34
GTG
2.84
GTA
0.24
8.53%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0
TCC
2.08
TCG
1.37
TCA
0.07
AGT
0.1
AGC
1.18
 
 
 
 
4.8%
ArgACG
1
GCG
 
CCG
2
TCG
 
 
 
 
 
CCT
1
TCT
1
5
CGT
0.5
CGC
3.8
CGG
3.03
CGA
0.21
 
 
 
 
AGG
0.31
AGA
0.05
7.9%
LeuAAG
 
GAG
3
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
7
CTT
0.16
CTC
5.26
CTG
4.85
CTA
0.02
 
 
 
 
TTG
0.16
TTA
0
10.45%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.03
TTC
2.71
 
 
 
 
2.74%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
0.06
AAC
1.68
 
 
 
 
1.74%
Lys 
 
 
 
CTT
3
TTT
1
4
 
 
 
 
AAG
2.15
AAA
0.07
2.22%
AspATC
 
GTC
2
 
 
 
 
2
GAT
0.28
GAC
5.57
 
 
 
 
5.85%
Glu 
 
 
 
CTC
4
TTC
1
5
 
 
 
 
GAG
5.12
GAA
0.79
5.91%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.14
CAC
2.12
 
 
 
 
2.26%
Gln 
 
 
 
CTG
2
TTG
1
3
 
 
 
 
CAG
2.52
CAA
0.08
2.6%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.05
ATC
3.06
 
 
ATA
0.05
3.16%
fMet/Met 
 
 
 
CAT
4/1
 
 
5
 
 
 
 
ATG
1.59
 
 
1.59%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0
TAC
2.02
 
 
 
 
2.02%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.23
TAG
0.05
TAA
0.02
0.3%
CysACA
 
GCA
2
 
 
 
 
2
TGT
0
TGC
0.69
 
 
 
 
0.69%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.52
 
 
1.52%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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