Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGTGTTAGCTCAGCTGGGAGAGCGCAACGCTGGCAGCGTTGAG...........GtCAGGGGTTCGATCCCCCTACACTCCACCA tRNA-Ala-GGC-1-1 Sc: 73.5 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGAATTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTATTCTCCACCA tRNA-Ala-TGC-1-1 Sc: 81.0 GGGGAATTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTATTCTCCACCA tRNA-Ala-TGC-1-2 Sc: 81.0 GGGGAATTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTATTCTCCACCA tRNA-Ala-TGC-1-3 Sc: 81.0
Arg tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGTTCGTAGCTCAGATGGAtAGAGCATTGGTTTGCGGTACCAACG...........GtCAGGGGTTCGAGTCCCTTCGAGCGCACCA tRNA-Arg-GCG-1-1 Sc: 70.6 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCTCGTAGCTCAATTGGAtAGAGCAACGGACTTCGGATCCGTAG...........GtTGTAGGTTCGACTCCTGTCGAGCGCACCA tRNA-Arg-TCG-1-1 Sc: 81.0 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTCCTCATAGCTCAGCAGGAtAGAGCACAGAATTCCTAATTCTGAG...........GtCGTGCGTTCGAATCGCGCTGGGGACACCA tRNA-Arg-CCT-1-1 Sc: 61.7 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCTCTTAGCTCAGCTGGAtAGAGCAACGCCCTTCTAAGGCGTAG...........GtCACACGTTCGAATCGTGTAGGGCGTACCA tRNA-Arg-TCT-1-1 Sc: 75.1
Asn tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCGAATTAGCTCAGCGGTA.GAGTAGGTGACTGTTAATCACTTG...........GtCGCTGGTTCGAATCCAGCATTCGGAGCCA tRNA-Asn-GTT-1-1 Sc: 80.1
Asp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGCGGTAGTTCAGTTGGTtAGAATATCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGCCCCGTCCGCCGCGCCA tRNA-Asp-GTC-1-1 Sc: 84.7
Cys tRNAs
>>>>>>>..>>>..........<<<..>>>>.......<<<<................>>>>>.......<<<<<.<<<<<<<.... GGCGATATAGCCAAGCGGTA.AGGCATGGGCCTGCAAAGCCTTG...........AtCCCCGGTTCAAATCCGGG.TGTCGCCTCCA tRNA-Cys-GCA-1-1 Sc: 69.7
Gln tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TGGGGTATAGCCAAGCGGTA.AGGCAACTGGTTTTGGTCCAGTCA...........TtCAGGGGTTCGAATCCCTTTACCCCATCCA tRNA-Gln-TTG-1-1 Sc: 68.8
Glu tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GACCCCATCGTCTAGTGGTt.A.GGACACCGCCCTCTCAAGGCGGGA...........ACGGGGGTTCAAGTCCCCCTGGGGTCGCCA tRNA-Glu-CTC-1-1 Sc: 75.7 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GACCCCATCGTCTAGTGGTccA.GGATCCCGCCCTTTCACGGCGGTT...........ACAGGGGTTCAAATCCCCTTGGGGTCGCCA tRNA-Glu-TTC-1-1 Sc: 64.6
Gly tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAATAGCTCAGT.GGT.A.GAGCACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAACCTCGTTTCCCGCTCCA tRNA-Gly-GCC-1-1 Sc: 84.7 GCGGGAATAGCTCAGT.GGT.A.GAGCACGACCTTGCCAAGGTCGGG...........GtCGCGAGTTCGAACCTCGTTTCCCGCTCCA tRNA-Gly-GCC-2-1 Sc: 84.5 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGTGTAGCTCAGT.GGT.A.GAGTGTTAGCTTCCCAAGCTGAAA...........GtCGCGGGTTCGAGCCCCGTCACCCGCTCCA tRNA-Gly-CCC-1-1 Sc: 81.4 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGGAGTAGCTCAGTTGGCtA.GAGCATTAGCCTTCCAAGCTGGGG...........GtCGCGGGTTCGAGTCCCGTCTCCCGCTCCA tRNA-Gly-TCC-1-1 Sc: 87.0
His tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGAGTGTAGCTCAGTCGGTtAGAGCATCAGGTTGTGGTTCTGAGG...........GtCGTGGGTTCGATCCCCATCACTCACCCCA tRNA-His-GTG-1-1 Sc: 66.7
Ile tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCTTATAGCTCAGGTGGTtAGAGCGTACCCCTGATAAGGGTAAG...........GtCAGAGGTTCGAGTCCTCTTAAGCCCACCA tRNA-Ile-GAT-1-1 Sc: 81.2 GGGCTTATAGCTCAGGTGGTtAGAGCGTACCCCTGATAAGGGTAAG...........GtCAGAGGTTCGAGTCCTCTTAAGCCCACCA tRNA-Ile-GAT-1-2 Sc: 81.2 GGGCTTATAGCTCAGGTGGTtAGAGCGTACCCCTGATAAGGGTAAG...........GtCAGAGGTTCGAGTCCTCTTAAGCCCACCA tRNA-Ile-GAT-1-3 Sc: 81.2
Leu tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<...>>>...........<<<...>>>>>.......<<<<<.<<<<<<<.... GCGGTCGTGGTGGAAC.GGTaG.ACACGCTACCTTGAGGTGGTAGTGCCTTA.........CGGGTGTGGGGGTTCAAATCCCCC.CGACCGCACCA tRNA-Leu-GAG-1-1 Sc: 66.8 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<..>>>>>.......<<<<<.<<<<<<<.... GCGGATATGGTGAAATTGGTaG.ACACGCCAGACTTAGGATCTGGT.GCC..GAGA.......GGCGTGGGAGTTCGAGTCTCTT.TATCCGCACCA tRNA-Leu-TAG-1-1 Sc: 72.3 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<..>>>>>.......<<<<<.<<<<<<<.... GCCTGAGTGGTGAAATTGGTaG.ACGCGCTAGACTCAAAATCTAGT.ATA..GAGA.......TATGTGCCGGTTCGAGTCCGGC.CTCAGGTACCA tRNA-Leu-CAA-1-1 Sc: 69.3 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>.........<<<<<..>>>>>.......<<<<<.<<<<<<<.... GCCCGGATGGCGAAATTGGTaG.ACGCAAGGGACTTAAAATCCCTC.GGGAGTTT......TTCCTGTGCCGGTTCAAATCCGGC.TCCGGGCACCA tRNA-Leu-TAA-1-1 Sc: 78.8
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GACTCGTTAGCTCAGTCGGTAGAGCATCTCCCTTTTAAGGAGGTG...........GtCGATGGTTCGAATCCATCACGGGTCACCA tRNA-Lys-TTT-1-1 Sc: 81.1 GACTCGTTAGCTCAGCCGGTAGAGCATCTCCCTTTTAAGGAGGTG...........GtCGATGGTTCGAATCCATCACGGGTCACCA tRNA-Lys-TTT-2-1 Sc: 80.1
Met/Ile2 tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTCAAGGTAGCTCAGCTGGTtAGAGCGCTGGTCTCATAAGCCGGAG...........GtCGAGGGTTCGAGTCCCTCTCTTGACACCA tRNA-Met-CAT-1-1 Sc: 79.8 .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCAGGATAGAGCAGTTGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGCTGGTTCAAGTCCGGCTCCTGCAACCA tRNA-fMet-CAT-1-1 Sc: 78.3 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTCCTTAGCTCAGTTGGTtAGAGCACCCCGCTCATAACGGGGTG...........GtCGAGTGTTCGAGCCACTCAGGACCCACCA tRNA-Ile2-CAT-1-1 Sc: 81.6
Phe tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCTGGATAGCTCAGTCGGTAGAGCAGGAGACTGAAAATCTCCGT...........GtCGGCGGTTCGATTCCGTCTCCAGCCACCA tRNA-Phe-GAA-1-1 Sc: 80.6
Pro tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGCGTAGCGCAGCCtGGCtAGCGCGCTACCTTGGGGTGGTAGAG...........GtCGCGTGTTCGAATCACGTCGCTCCGACCA tRNA-Pro-GGG-1-1 Sc: 67.0 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGGCGTAGCGCAGTCtGGTcAGCGCACCTGGTTTGGGACCAGGGG...........GtCGAAGGTTCGAATCCTTTCGCCCCGACCA tRNA-Pro-TGG-1-1 Sc: 84.0
SeC tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<.<..>>>>.>........<.<<<<...>>>>>.......<<<<<<<<<<<.<.... GGGGGGTATGTGACTCtGGTGtGCACCACGGCCTTCAAAGCCGaTTGGAGGGGCgGTTGaCCGTCTCTtGGGAGGTTCGATTCCTCCACCCTCtCGCCA tRNA-SeC-TCA-1-1 Sc: 78.5
Ser tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>.........<<<<<..>>>>>.......<<<<<..<<<<<<<.... AGAGAGGTGTCCGAGCGGTtgA.AGGAGCACGCCTGGAACGCGTGT.GTGGG.GCAA....CTCAC.CGAGGGTTCGAATCCCTT..CCTCTCTGCCA tRNA-Ser-GGA-1-1 Sc: 73.8 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.............<<<..>>>>>.......<<<<<..<<<<<<<.... CGGGAGATGGCAGAGCGGCttA.ATGCGGCGGTCTTGAAAACCGTTGAGG...GTAAta....CCTCCGGGGGTTCAAATCCCTC..TCTCCCGGCCA tRNA-Ser-TGA-1-1 Sc: 74.2 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<..>>>>>.......<<<<<..<<<<<<<.... GGACAGATGGGTGAGTGGCtgA.AACCACACCCCTGCTAAGGGTGC.GTCGGGGTGA...CCTGAC.CGAGGGTTCAAATCCCTC..TCTGTCCGCCA tRNA-Ser-GCT-1-1 Sc: 80.2
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTCATATGGCTCAGG.GGTA.GAGCACTTCCTTGGTAAGGAAGAG...........GtCGAGGGTTCAAGTCCCTCTATGAGCTCCA tRNA-Thr-GGT-1-1 Sc: 80.1 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCTGGTGTAGCTCAGTTGGTA.GAGCAACTGCCTTGTAAGCAGTAG...........GtCGGCGGTTCGATTCCGTTCACCAGCTCCA tRNA-Thr-TGT-1-1 Sc: 88.4
Trp tRNAs
>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... AGGGTAGTAGCTCCAACGGTAGAGCGTCGGTCTCCAAAACCGCAG...........GtTGGGGGTTCGAGTCCCTCCTACCCTGCCA tRNA-Trp-CCA-1-1 Sc: 74.4
Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<....>>.......<<.....>>>>>.......<<<<<<<<<<<<.... GGTGAGATACTCAAGTGGCcaA.CGAGGGCAGACTGTAAATCTGCTGACTA.......TGTCTtCGAAGGTTCGAATCCTTCTCTCACCACCA tRNA-Tyr-GTA-1-1 Sc: 65.5
Val tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGTCGCGTAGCTCAGTTGGTAGAGCACTACCTTGACATGGTAGTG...........GtCGGAGGTTCGAATCCTCTCGTGGCCACCA tRNA-Val-GAC-1-1 Sc: 79.4 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGTCGCTTAGCTCAGTTGGTAGAGCGCCACCCTTACAAGGTGGAT...........GtCATAAGTTCGAGTCTTATAGCGACCACCA tRNA-Val-TAC-1-1 Sc: 84.4