tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 45
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 2
Total tRNAs 47
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 3020
Number of Codons: 994748

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
 
TGC
2
3
GCT
2.63
GCC
1.58
GCG
1.23
GCA
2.53
7.97%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
2.03
GGC
1.52
GGG
1.07
GGA
1.45
6.07%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
1.7
CCC
0.79
CCG
0.6
CCA
1.13
4.22%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
1.69
ACC
1.27
ACG
0.75
ACA
1.46
5.17%
ValAAC
 
GAC
1
CAC
 
TAC
1
2
GTT
2.27
GTC
1.07
GTG
1.29
GTA
1.29
5.92%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
 
TGA
1
ACT
 
GCT
1
 
 
 
 
3
TCT
1.2
TCC
0.75
TCG
0.62
TCA
1.31
AGT
1.31
AGC
1.11
 
 
 
 
6.3%
ArgACG
1
GCG
 
CCG
 
TCG
1
 
 
 
 
CCT
1
TCT
1
4
CGT
1.16
CGC
0.99
CGG
0.47
CGA
0.74
 
 
 
 
AGG
0.45
AGA
0.73
4.54%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
2.16
CTC
1.02
CTG
0.95
CTA
1.11
 
 
 
 
TTG
2.08
TTA
3.84
11.16%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
3.41
TTC
1.14
 
 
 
 
4.55%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
3.36
AAC
1.31
 
 
 
 
4.67%
Lys 
 
 
 
CTT
1
TTT
2
3
 
 
 
 
AAG
1.52
AAA
4.5
6.02%
AspATC
 
GTC
1
 
 
 
 
1
GAT
3.63
GAC
1.05
 
 
 
 
4.68%
Glu 
 
 
 
CTC
 
TTC
2
2
 
 
 
 
GAG
1.89
GAA
4.22
6.11%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.8
CAC
0.66
 
 
 
 
2.46%
Gln 
 
 
 
CTG
 
TTG
1
1
 
 
 
 
CAG
1.24
CAA
3.34
4.58%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
4.12
ATC
1.87
 
 
ATA
1.29
7.28%
fMet/Met 
 
 
 
CAT
1/2
 
 
3
 
 
 
 
ATG
2.24
 
 
2.24%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
2.3
TAC
1.01
 
 
 
 
3.31%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.07
TAG
0.06
TAA
0.17
0.3%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.6
TGC
0.54
 
 
 
 
1.14%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.13
 
 
1.13%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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