tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 43
Selenocysteine tRNAs (TCA) 1
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 45
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 1627
Number of Codons: 479056

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
1.2
GCC
2.07
GCG
1.1
GCA
1.88
6.25%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
2.08
GGC
1.72
GGG
0.96
GGA
2.25
7.01%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
1.01
CCC
1.55
CCG
0.44
CCA
1.15
4.15%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.76
ACC
1.76
ACG
0.53
ACA
0.95
4%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
2.08
GTC
0.97
GTG
2.96
GTA
1.75
7.76%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
2
TGA
1
ACT
 
GCT
1
 
 
 
 
5
TCT
1.1
TCC
1.37
TCG
0.28
TCA
0.55
AGT
0.61
AGC
1.33
 
 
 
 
5.24%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
4
CGT
0.2
CGC
0.22
CGG
0.21
CGA
0.12
 
 
 
 
AGG
2.96
AGA
1.71
5.42%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
3.25
CTC
1.59
CTG
1.54
CTA
1.39
 
 
 
 
TTG
2.39
TTA
1.37
11.53%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
3.74
TTC
1.21
 
 
 
 
4.95%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.94
AAC
2.25
 
 
 
 
3.19%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
4.65
AAA
3.29
7.94%
AspATC
 
GTC
1
 
 
 
 
1
GAT
2.18
GAC
2.31
 
 
 
 
4.49%
Glu 
 
 
 
CTC
 
TTC
1
1
 
 
 
 
GAG
4.55
GAA
4.17
8.72%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.75
CAC
0.89
 
 
 
 
1.64%
Gln 
 
 
 
CTG
 
TTG
1
1
 
 
 
 
CAG
1.35
CAA
1.37
2.72%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
 
TAT
 
1
ATT
1.45
ATC
1.43
 
 
ATA
3.73
6.61%
fMet/Met 
 
 
 
CAT
1/2
 
 
3
 
 
 
 
ATG
2.03
 
 
2.03%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
1.7
TAC
2.24
 
 
 
 
3.94%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.14
TAG
0.05
TAA
0.14
0.33%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.3
TGC
0.52
 
 
 
 
0.82%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.04
 
 
1.04%
SelCys 
 
 
 
 
 
TCA
1
1
 
 
 
 
 
 
 
 
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