tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 44
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 1
Total tRNAs 45
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 3283
Number of Codons: 1008904

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
0.41
GCC
6.92
GCG
2.87
GCA
0.74
10.94%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
1.32
GGC
5.24
GGG
1.21
GGA
0.5
8.27%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
0.3
CCC
2.57
CCG
2
CCA
0.22
5.09%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.17
ACC
3.45
ACG
0.95
ACA
0.23
4.8%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
0.28
GTC
1.79
GTG
5.2
GTA
0.28
7.55%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0.1
TCC
1.76
TCG
0.72
TCA
0.21
AGT
0.34
AGC
1.79
 
 
 
 
4.92%
ArgACG
1
GCG
 
CCG
2
TCG
 
 
 
 
 
CCT
1
TCT
1
5
CGT
0.98
CGC
4.17
CGG
2.04
CGA
0.32
 
 
 
 
AGG
0.36
AGA
0.14
8.01%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
 
4
CTT
0.43
CTC
2.14
CTG
7.95
CTA
0.1
 
 
 
 
TTG
0.55
TTA
0.05
11.22%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
0.43
TTC
2.93
 
 
 
 
3.36%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
0.51
AAC
2.01
 
 
 
 
2.52%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
2.31
AAA
0.37
2.68%
AspATC
 
GTC
1
 
 
 
 
1
GAT
1.66
GAC
4.02
 
 
 
 
5.68%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
4.69
GAA
1.91
6.6%
HisATG
 
GTG
1
 
 
 
 
1
CAT
0.7
CAC
1.81
 
 
 
 
2.51%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
3.35
CAA
0.33
3.68%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
0.38
ATC
4.13
 
 
ATA
0.11
4.62%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.49
 
 
2.49%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
0.5
TAC
1.83
 
 
 
 
2.33%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.22
TAG
0.05
TAA
0.05
0.32%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.1
TGC
0.72
 
 
 
 
0.82%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
1.38
 
 
1.38%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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