tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 45
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 45
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 1059
Number of Codons: 358377

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
1.62
GCC
1.56
GCG
3.85
GCA
3.06
10.09%
GlyACC
 
GCC
1
CCC
 
TCC
1
2
GGT
1.91
GGC
1.48
GGG
1.96
GGA
1.62
6.97%
ProAGG
 
GGG
1
CGG
1
TGG
1
3
CCT
1.32
CCC
0.95
CCG
1.28
CCA
0.65
4.2%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
0.98
ACC
1.45
ACG
1.81
ACA
1.05
5.29%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
1.89
GTC
1.24
GTG
3.64
GTA
1.57
8.34%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
1.5
TCC
1.05
TCG
1.06
TCA
0.8
AGT
1.07
AGC
1.02
 
 
 
 
6.5%
ArgACG
 
GCG
1
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
5
CGT
2.12
CGC
2.37
CGG
1.25
CGA
0.57
 
 
 
 
AGG
0.6
AGA
0.51
7.42%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
2.36
CTC
2.11
CTG
2.25
CTA
0.57
 
 
 
 
TTG
2
TTA
0.86
10.15%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
3.07
TTC
1.35
 
 
 
 
4.42%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
1.29
AAC
1.17
 
 
 
 
2.46%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
2.15
AAA
1.8
3.95%
AspATC
 
GTC
1
 
 
 
 
1
GAT
2.62
GAC
1.89
 
 
 
 
4.51%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
3.14
GAA
2.81
5.95%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.18
CAC
1.58
 
 
 
 
2.76%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
2.64
CAA
1.18
3.82%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
2.24
ATC
1.73
 
 
ATA
0.9
4.87%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
1.96
 
 
1.96%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
1.4
TAC
1.56
 
 
 
 
2.96%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.11
TAG
0.12
TAA
0.07
0.3%
CysACA
 
GCA
1
 
 
 
 
1
TGT
1
TGC
0.88
 
 
 
 
1.88%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.98
 
 
0.98%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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