tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 45
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 45
Intron Summary (tRNAs with introns: 0)

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 776
Number of Codons: 253354

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
 
GGC
1
CGC
1
TGC
1
3
GCT
2.08
GCC
0.94
GCG
1.42
GCA
2.36
6.8%
GlyACC
 
GCC
1
CCC
1
TCC
1
3
GGT
1.61
GGC
1.69
GGG
0.7
GGA
2.4
6.4%
ProAGG
 
GGG
1
CGG
 
TGG
1
2
CCT
1.25
CCC
0.46
CCG
0.97
CCA
0.44
3.12%
ThrAGT
 
GGT
1
CGT
1
TGT
1
3
ACT
1.51
ACC
0.57
ACG
1.04
ACA
1.56
4.68%
ValAAC
 
GAC
1
CAC
1
TAC
1
3
GTT
3.04
GTC
0.8
GTG
0.96
GTA
1.83
6.63%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
 
GGA
1
CGA
2
TGA
1
ACT
 
GCT
1
 
 
 
 
5
TCT
1.6
TCC
0.62
TCG
0.89
TCA
1.49
AGT
1
AGC
0.94
 
 
 
 
6.54%
ArgACG
1
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
1
4
CGT
0.37
CGC
0.33
CGG
0.19
CGA
0.16
 
 
 
 
AGG
0.6
AGA
2.46
4.11%
LeuAAG
 
GAG
1
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
5
CTT
2.77
CTC
0.48
CTG
0.85
CTA
0.38
 
 
 
 
TTG
1.72
TTA
2.59
8.79%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
1
 
 
 
 
1
TTT
3.9
TTC
0.81
 
 
 
 
4.71%
AsnATT
 
GTT
1
 
 
 
 
1
AAT
3.7
AAC
1.52
 
 
 
 
5.22%
Lys 
 
 
 
CTT
1
TTT
1
2
 
 
 
 
AAG
1.74
AAA
8.01
9.75%
AspATC
 
GTC
1
 
 
 
 
1
GAT
3.58
GAC
1.57
 
 
 
 
5.15%
Glu 
 
 
 
CTC
1
TTC
1
2
 
 
 
 
GAG
1.43
GAA
5.33
6.76%
HisATG
 
GTG
1
 
 
 
 
1
CAT
1.06
CAC
0.42
 
 
 
 
1.48%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
1.47
CAA
1.06
2.53%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
CAT
1
TAT
 
2
ATT
3.94
ATC
0.87
 
 
ATA
4.36
9.17%
fMet/Met 
 
 
 
CAT
1/1
 
 
2
 
 
 
 
ATG
2.24
 
 
2.24%
TyrATA
 
GTA
1
 
 
 
 
1
TAT
2.6
TAC
0.9
 
 
 
 
3.5%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.08
TAG
0.05
TAA
0.17
0.3%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0.7
TGC
0.61
 
 
 
 
1.31%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0.68
 
 
0.68%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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