tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.1 (March 2018) scan results 
Started: Mon Jan 14 15:33:25 PST 2019

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         8041
Seqs w/at least 1 hit:  37
Bases read:             264974304 (x2 for both strands)
Bases in tRNAs:         41768
tRNAs predicted:        529
Av. tRNA length:        78
Script CPU time:        38.96 s
Scan CPU time:          2425.89 s
Scan speed:             218.5 Kbp/sec

First pass search(es) ended: Mon Jan 14 16:13:29 PST 2019

Infernal Stats:
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Candidate tRNAs read:     529
Infernal-confirmed tRNAs:     450
Bases scanned by Infernal:  52348
% seq scanned by Infernal:  0.0 %
Script CPU time:          3.85 s
Infernal CPU time:            310.12 s
Scan speed:               168.8 bp/sec

Infernal analysis of tRNAs ended: Mon Jan 14 16:19:18 PST 2019

Overall scan speed: 190709.9 bp/sec