tRNA Gene Summary

Overview
High confidence set 438
tRNAs decoding standard 20 AA 437
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 4
Secondary filter (low feature scores, possible rep. element) 7

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 28)
Leu CAA
3
Ile TAT
2
Tyr GTA
23

The codon usage of this genome was obtained from the Codon Usage Database.
Number of CDS: 782
Number of Codons: 304153

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
17
GGC
 
CGC
8
TGC
3
28
GCT
1.2
GCC
2.71
GCG
2.53
GCA
1.39
7.83%
GlyACC
 
GCC
16
CCC
 
TCC
9
25
GGT
1.67
GGC
2.42
GGG
1
GGA
1.27
6.36%
ProAGG
8
GGG
 
CGG
15
TGG
9
32
CCT
0.47
CCC
1.06
CCG
2.66
CCA
0.97
5.16%
ThrAGT
8
GGT
 
CGT
5
TGT
2
15
ACT
0.61
ACC
1.9
ACG
2.48
ACA
0.8
5.79%
ValAAC
32
GAC
 
CAC
29
TAC
3
64
GTT
1.07
GTC
1.55
GTG
3.13
GTA
0.83
6.58%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
6
GGA
 
CGA
8
TGA
2
ACT
 
GCT
6
 
 
 
 
22
TCT
0.44
TCC
1.29
TCG
2.11
TCA
0.56
AGT
0.77
AGC
1.9
 
 
 
 
7.07%
ArgACG
11
GCG
 
CCG
 
TCG
8
 
 
 
 
CCT
2
TCT
2
23
CGT
0.95
CGC
1.94
CGG
1.57
CGA
0.79
 
 
 
 
AGG
0.36
AGA
0.43
6.04%
LeuAAG
5
GAG
 
CAG
12
TAG
4
 
 
 
 
CAA
3
TAA
2
26
CTT
0.78
CTC
1.42
CTG
4.6
CTA
0.69
 
 
 
 
TTG
1.1
TTA
0.42
9.01%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
9
 
 
 
 
9
TTT
1.39
TTC
2.67
 
 
 
 
4.06%
AsnATT
 
GTT
12
 
 
 
 
12
AAT
1.43
AAC
3.04
 
 
 
 
4.47%
Lys 
 
 
 
CTT
17
TTT
7
24
 
 
 
 
AAG
3.39
AAA
1.47
4.86%
AspATC
 
GTC
26
 
 
 
 
26
GAT
2.46
GAC
2.79
 
 
 
 
5.25%
Glu 
 
 
 
CTC
15
TTC
11
26
 
 
 
 
GAG
3.59
GAA
2.2
5.79%
HisATG
 
GTG
21
 
 
 
 
21
CAT
0.99
CAC
1.72
 
 
 
 
2.71%
Gln 
 
 
 
CTG
11
TTG
4
15
 
 
 
 
CAG
3.31
CAA
1.16
4.47%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
13
GAT
 
CAT
 
TAT
2
15
ATT
1.31
ATC
2.83
 
 
ATA
0.8
4.94%
iMet/Met 
 
 
 
CAT
11/8
 
 
19
 
 
 
 
ATG
2.41
 
 
2.41%
TyrATA
 
GTA
23
 
 
 
 
23
TAT
0.86
TAC
2.56
 
 
 
 
3.42%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.07
TAG
0.07
TAA
0.12
0.26%
CysACA
 
GCA
5
 
 
 
 
5
TGT
0.91
TGC
1.43
 
 
 
 
2.34%
Trp 
 
 
 
CCA
7
 
 
7
 
 
 
 
TGG
1.18
 
 
1.18%
SelCys 
 
 
 
 
 
TCA
1
1
 
 
 
 
 
 
 
 
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