tRNA Gene Summary

Overview
High confidence set 398
tRNAs decoding standard 20 AA 397
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 29
Unexpected anticodons 4
Non-canonical anticodon loop length 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 183250
Secondary filter (low feature scores, possible rep. element) 3548
Tertiary filter (excessive isotype copies, possible rep. element) 143

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 29)
Arg TCT
5
Leu CAA
7
Lys CTT
1
Ile TAT
5
Tyr GTA
11
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
17
GGC
 
CGC
5
TGC
8
30
GlyACC
 
GCC
10
CCC
4
TCC
4
18
ProAGG
9
GGG
 
CGG
4
TGG
7
20
ThrAGT
10
GGT
 
CGT
5
TGT
7
22
ValAAC
10
GAC
 
CAC
9
TAC
7
26
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
10
GGA
 
CGA
4
TGA
3
ACT
 
GCT
10
 
 
 
 
27
ArgACG
8
GCG
 
CCG
5
TCG
5
 
 
 
 
CCT
7
TCT
6
31
LeuAAG
7
GAG
 
CAG
4
TAG
4
 
 
 
 
CAA
7
TAA
3
25
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
11
 
 
 
 
11
AsnATT
 
GTT
13
 
 
 
 
13
Lys 
 
 
 
CTT
35
TTT
14
49
AspATC
 
GTC
8
 
 
 
 
8
Glu 
 
 
 
CTC
6
TTC
8
14
HisATG
 
GTG
8
 
 
 
 
8
Gln 
 
 
 
CTG
12
TTG
4
16
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
12
GAT
 
CAT
 
TAT
5
17
iMet/Met 
 
 
 
CAT
8/11
 
 
19
TyrATA
 
GTA
11
 
 
 
 
11
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
24
 
 
 
 
24
Trp 
 
 
 
CCA
8
 
 
8
SelCys 
 
 
 
 
 
TCA
1
1