tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.1 (March 2018) scan results 
Started: Mon Jan 14 15:04:07 PST 2019

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Mito isotype model scan:           vert
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         7093
Seqs w/at least 1 hit:  358
Bases read:             2161713562 (x2 for both strands)
Bases in tRNAs:         164973
tRNAs predicted:        2212
Av. tRNA length:        74
Script CPU time:        204.12 s
Scan CPU time:          11526.40 s
Scan speed:             375.1 Kbp/sec

First pass search(es) ended: Mon Jan 14 15:55:02 PST 2019

Infernal Stats:
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Candidate tRNAs read:     2212
Infernal-confirmed tRNAs:     1384
Bases scanned by Infernal:  209213
% seq scanned by Infernal:  0.0 %
Script CPU time:          17.33 s
Infernal CPU time:            1108.13 s
Scan speed:               188.8 bp/sec

Infernal analysis of tRNAs ended: Mon Jan 14 16:22:34 PST 2019

Overall scan speed: 336297.0 bp/sec