Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGGGTTTTAGCTCAGTTGGTAGAGTGCTCGCTTAGCATGTGAGAG...........GtCAAGGGTTCAACTCCCTTAAATTCCA tRNA-Ala-AGC-1-1 Sc: 67.3 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGGGAATTAGCTCAGTTGGTAGAGCGCTTGATTCGCATTTGAGAG...........GtCGTGGGTTCAATTCCTGCATTCTCCA tRNA-Ala-CGC-1-1 Sc: 66.5 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGGGACATAGCTCAGTTGGTAGAGCGCTTGATTTGCATTCAAGAG...........GcCGAGGGTTCGATTCCTTCTGTCTCCA tRNA-Ala-TGC-1-1 Sc: 79.6 GGGGACATAGCTCAGTTGGTAGAGCGCTTGATTTGCATTCAAGAG...........GcCGAGGGTTCGATTCCTTCTGTCTCCA tRNA-Ala-TGC-1-2 Sc: 79.6 GGGGACATAGCTCAGTTGGTAGAGCGCTTGATTTGCATTCAAGAG...........GcCGAGGGTTCGATTCCTTCTGTCTCCA tRNA-Ala-TGC-1-3 Sc: 79.6
Arg tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GAGTCTGTGGCCCAAC.GGCtA.AGGCGTCTGACTACGGATCAGGAG...........AtTGCGGGTTCAAATCCCGTCAGACTCG tRNA-Arg-ACG-1-1 Sc: 62.7 GAGTCTGTGGCCCAAC.GGCtA.AGGCGTCTGACTACGGATCAGGAG...........AtTGCGGGTTCAAATCCCGTCAGACTCG tRNA-Arg-ACG-1-2 Sc: 62.7 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<. ACCTCAGTGGCGCAATTGGCtA.GCGCGTTTGACTTCTAATCAAAAG...........GtTGCGAGTTCGATTCCCGCCTGGGGTG tRNA-Arg-TCT-1-1 Sc: 73.7 ACCTTAGTGGCGCAATTGGCtA.GCGCGTTTGACTTCTAATCAAAAG...........GtTGCGAGTTCGATTCCCGCCTGGGGTG tRNA-Arg-TCT-2-1 Sc: 70.6
Asn tRNAs
>>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<.<<<<<. GCTCTTGTAGCGCAGTGGTtA.GCGCGTTCGGCTGTTAACCGAAAG...........GtCCTGGGTTCGAATCCCAGTTAGAGCG tRNA-Asn-GTT-1-1 Sc: 87.2
Asp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. TCTTCCTTGGTGTAGGGGTtA.GCATCTTAGCCTGTCACGCTGAAG...........ACCTGGGTTCGATTCCCAGAGGAAGAG tRNA-Asp-GTC-1-1 Sc: 62.9 TCTTCCTTGGTGTAGGGGTtA.GCATCTTAGCCTGTCACGCTGAAG...........ACCTGGGTTCGATTCCCAGAGGAAGAG tRNA-Asp-GTC-1-2 Sc: 62.9
Cys tRNAs
Gln tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. GGTCTTATGGTGTAGTGGTtA.TCACTTGAGATTCTGATTCTCAAA...........ACCCGAGTTCGAATCTCGGTAAGACCT tRNA-Gln-CTG-1-1 Sc: 71.8 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. GGTCGTATGGTGTAGTGGTtA.GCATTTAGGGTTTTGATTCCTACG...........ACGTGAGTTCGAATCTCACTATGACCA tRNA-Gln-TTG-1-1 Sc: 63.8
Glu tRNAs
>>>>>>>..>>>>.........<<<<..>>>>.......<<<<................>>>>>.......<<<<<<<<<<<<. TCCTTGGTGGTCCAGTGGTtA.GGATGTCTGGTTTTCACCCAGTCG...........GCCCGGGTTCGATTCCCGGCCAGGGAA tRNA-Glu-TTC-1-1 Sc: 73.2
Gly tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. GCGTTATTTGTCTAGTGGT.A.TGATACATCCCTGCCACGGATGAG...........GCCCGGGTTCGATTCCCGGATGACGCA tRNA-Gly-GCC-1-1 Sc: 64.0 GCGTTATTTGTCTAGTGGT.A.TGATACATCCCTGCCACGGATGAG...........GCCCGGGTTCGATTCCCGGATGACGCA tRNA-Gly-GCC-1-2 Sc: 64.0 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. GCGTAAATAGTATAGTGGTaA.GTATGTCTGCCTTCCAAGCAGACG...........ACCTGGGTTCGAATCCCGGTTTACGCA tRNA-Gly-TCC-1-1 Sc: 70.8 >>>>>>>..>>>>.........<<<<..>>>>.......<<<<................>>>>>.......<<<<<<<<<<<<. GCGTGAATAGTACAGTGGTtA.GTATGACTGCCTTCCAAGCAGCCG...........ACCCGGGTTCGAATCCCGGTTTACGCA tRNA-Gly-TCC-2-1 Sc: 67.7 GCGTGAATAGTACAGTGGTtA.GTATGACTGCCTTCCAAGCAGCCG...........ACCCGGGTTCGAATCCCGGTTTACGCA tRNA-Gly-TCC-2-2 Sc: 67.7 GCGTGAATAGTACAGCGGTtA.GTATGACTGCCTTCCAAGCAGCCG...........ACCCGGGTTCGAATCCCGGTTTACGCA tRNA-Gly-TCC-3-1 Sc: 65.2
His tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCTGTAGTAGCTCAGTTGGTtAGAGTGTCACGTTGTGGCCGTGAAG...........GtCCCGGGTTCGACTCTCGGTTACAGCA tRNA-His-GTG-1-1 Sc: 71.1 GCTGTAGTAGCTCAGTTGGTtAGAGTGTCACGTTGTGGCCGTGAAG...........GtCCCGGGTTCGACTCTCGGTTACAGCA tRNA-His-GTG-1-2 Sc: 71.1
Ile tRNAs
..>>>>>>>..>>>>.............<<<<.>>>>>........................................<<<<<................>>>>>.......<<<<<<<<<<<<. ..GCTCCCTTAGCTCAGCTGGTtA....GAGCGTGGTGCTAATA.................................ACGCCAAG...........GtCTTGGGTTCGATCCCCAAAGGGAGCA tRNA-Ile-AAT-1-1 Sc: 82.0 ..GCTTCCTTAGCTCAGCTGGTtA....GAGCGTGGTGCTAATA.................................ACGCCAAG...........GtCTTGGGTTCGATCCCCAAAGGAAGCA tRNA-Ile-AAT-2-1 Sc: 81.0 ..>>...>...>>>...............<<<.>>>>>........................................<<<<<................>>>>>.......<<<<<.<...<<. gaGCACACGTAGCT.....GGTtA....GAGCGTGGTGCTAATA.................................ACGCCAAG...........GtCTTGGGTTCGATCCCCAAAGGAAGCA tRNA-Ile-AAT-3-1 Sc: 37.3 ..>>>>>>>..>>>>.............<<<<.>>>>>........................................<<<<<................>>>>>.......<<<<<<<<<<<<. ..GCCCCTGTAGCTCAGATGGTtA....GAGCGCGGTACTTATAtgcttgcatatgcctattagtgaaagctaagatATGCCGAT...........GtCGAGGGTTCGAGTCCCTTCAGGGGCA tRNA-Ile-TAT-1-1 Sc: 69.5
Leu tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>............<<<..>>>>>.......<<<<<.<<<<<<<. GGTCAGATGGCCGAGTGGTt.A.AGGCGGTAGCTTAAGGCGCTATTCTC.GTA........GAGGCGCGGGTTCGAATCCCGT.TCTGGCCA tRNA-Leu-AAG-1-1 Sc: 73.5 GGTCAGATGGCCGAGTGGTt.A.AGGCGGTAGCTTAAGGCGCTATTCTC.GTA........GAGGCGCGGGTTCGAATCCCGT.TCTGGCCA tRNA-Leu-AAG-1-2 Sc: 73.5 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>............<<<..>>>>>.......<<<<<.<<<<<<<. GACAGAATGGCCGAGCGGTctA.AGGCGCTACGTTCAGGTCGTAGTCAT.CAT........ATGGCGCGGGTTCGAATCCCGC.TTCTGTCA tRNA-Leu-CAG-1-1 Sc: 65.8 GACAGAATGGCCGAGCGGTctA.AGGCGCTACGTTCAGGTCGTAGTCAT.CAT........ATGGCGCGGGTTCGAATCCCGC.TTCTGTCA tRNA-Leu-CAG-1-2 Sc: 65.8 GACAGAATGGCCGAGCGGTctA.AGGCGCTACGTTCAGGTCGTGGTCAT.CAT........ATGGCGCGGGTTCGAATCCCGC.TTCTGTCA tRNA-Leu-CAG-2-1 Sc: 62.0 >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....................>>>>>.......<<<<<.<<<<<<<. GGTGCGATGGCCGAGCGGTt.A.AGGCGCTGGGTCTAGGTTCCAGT....TAA...........CCGGGGGTTCGAATCCCTC.TCGCACCA tRNA-Leu-TAG-1-1 Sc: 57.9 GGTGCGATGGCCGAGCGGTt.A.AGGCGCTGGGTCTAGGTTCCAGT....CAA...........CCGGGGGTTCGAATCCCTC.TCGCACCA tRNA-Leu-TAG-2-1 Sc: 56.9 >>>>>>>..>>>............<<<.>>.>>.......<<.<<.>>..............<<..>>>>>.......<<<<<.<<<<<<<. AGTAACGTGGCCGAGTGGTctA.AGGCGACTGACTCAAGATCTGTTCCTC..........ACGGGCGCGGGTTCGAATCCCGC.CGTTACTA tRNA-Leu-CAA-1-1 Sc: 68.5 >>>>>>>..>>>............<<<.>>.>>.......<<.<<.>>>............<<<..>>>>>.......<<<<<.<<<<<<<. GGTAGCGTGGCCGAGCGGTt.A.AGGCGGTTGACTTAAGATCCACTTCT.TCAT.......AGAGCGTGGGTTCAAATCCCAC.CGCTACCA tRNA-Leu-TAA-1-1 Sc: 63.0 GGTAGCGTGGCCGAGCGGTt.A.AGGCGGTTGACTTAAGATCCACTTCT.TCAT.......AGAGCGTGGGTTCAAATCCCAC.CGCTACCA tRNA-Leu-TAA-1-2 Sc: 63.0
Lys tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCCCGGCTAGCTCAGTCGGTAGAGCATCAGACTCTTAATCTGAGC...........GtCGTGGGTTCGATCCCCACGTTGGGCG tRNA-Lys-CTT-2-1 Sc: 85.2 GCCCGGCTAGCTCAGTCGGTAGAGCATCAGACTCTTAATCTGAGC...........GtCGTGGGTTCGATCCCCACGTTGGGCG tRNA-Lys-CTT-2-2 Sc: 85.2 GCCCGGCTAGCTCAGTCGGTAGAGCATCAGACTCTTAATCTGAGC...........GtCGTGGGTTCGATCCCCACGTTGGGCG tRNA-Lys-CTT-2-3 Sc: 85.2 GCCCGGCTAGCTCAGTCGGTAGAGCATCAGACTCTTAATCTGAGC...........GtCGTGGGTTCGATCCCCACGTTGGGCG tRNA-Lys-CTT-2-4 Sc: 85.2 GCCCGACTAGCTCAGTCGGTAGAGCATCAGACTCTTAATCTGAGC...........GtCGTGGGTTCGAGCCCCACGTTGGGCG tRNA-Lys-CTT-1-1 Sc: 84.2 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCCCCGTTAGCTCAGTCGGTAGAGCATCAGGCTTTTAACCTGAGG...........GtCGTGGGTTCAAGTCCCACATGGGGCG tRNA-Lys-TTT-1-1 Sc: 88.8 GCCCCGTTAGCTCAGTCGGTAGAGCATCAGGCTTTTAACCTGAGG...........GtCGTGGGTTCAAGTCCCACATGGGGCG tRNA-Lys-TTT-1-2 Sc: 88.8 GCCCCGTTAGCTCAGTCGGTAGAGCATCAGGCTTTTAACCTGAGG...........GcCGTGGGTTCAAGTCCCACATGGGGCG tRNA-Lys-TTT-2-1 Sc: 88.8 GCCCCGTTAGCTCAGTCGGTAGAGCATCAGGCTTTTAACCTGAGG...........GcCGTGGGTTCAAGTCCCACATGGGGCG tRNA-Lys-TTT-2-2 Sc: 88.8
Met tRNAs
>>>>>.>..>>.>..........<.<<.>>>>.........<<<<................>>>>>.......<<<<<<.<<<<<. GCGGGTGTGGCACAGTTGGTtA.GCGCGTCAGTCTCATAATCTGAAA...........GtCGTGAGTTCGAATCTCACCTCCCGCA tRNA-Met-CAT-1-1 Sc: 73.0 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. AGCACTGTAGCGCAGT.GGG.A.GCGCGACAGGCTCATAACCTGTAG...........GtCCGAGGATCGAAACCTCGCAGTGCTA tRNA-iMet-CAT-1-1 Sc: 68.7
Phe tRNAs
>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<. GCGACAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGCAG...........GtCGTGAGTTCGATCCTCACTTGTCGCA tRNA-Phe-GAA-1-1 Sc: 74.8
Pro tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGTGATATAGTCTAGTGGT.A.TGATGTCTGCTTAGGGTGCAGGAG...........GtCCCGAGTTCGAATCTCGGTATCGCCC tRNA-Pro-AGG-1-1 Sc: 67.5 GGTGATATAGTCTAGTGGT.A.TGATGTCTGCTTAGGGTGCAGGAG...........GtCCCGAGTTCGAATCTCGGTATCGCCC tRNA-Pro-AGG-1-2 Sc: 67.5 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGTGACATCGTCTAGTGGT.A.TGATGCGTGTTTCGGGTACGCGCG...........G.CCTGGGTTCGAATCCCAGTGTTGCCA tRNA-Pro-CGG-1-1 Sc: 55.9 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGTCGCTTAGTCTAGTGGCtA.TGATTCCTGGTTTGGGTCCAGGAG...........GtCCAGGGTTCGAATCCCTGAGCGACCC tRNA-Pro-TGG-1-1 Sc: 67.0 GGTCGCTTAGTCTAGTGGCtA.TGATTCCTGGTTTGGGTCCAGGAG...........GtCCAGGGTTCGAATCCCTGAGCGACCC tRNA-Pro-TGG-1-2 Sc: 67.0
SeC tRNAs
Ser tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<. GTCACTGTGACCGAGTGGTtA.AGGTGCTAGATTAGAAATCTGGT.GTG..TTTA.......CACG.CGCAGGTTCAAATCCTGT.CGGTGACG tRNA-Ser-AGA-1-1 Sc: 73.6 >>>>>.>..>>>...........<<<.>>>>>.......<<<<<..>>>>>.........<<<<<...>>>>>.......<<<<<.<.<<<<<. GTCAATGTGGCCGAGTGGTtA.AGGCGACTGATTCGAAATCAGTT.GGGCA.........TGTCCTtCGCAGGTTCGAATCCTGT.CTTTGACG tRNA-Ser-CGA-1-1 Sc: 68.9 GTCAATGTGGCCGAGTGGTtA.AGGCGACTGATTCGAAATCAGTT.GGGCA.........TGTCCTtCGCAGGTTCGAATCCTGT.CTTTGACG tRNA-Ser-CGA-1-2 Sc: 68.9 >>>>>>>..>>>...........<<<..>>>>.......<<<<...>>>>...........<<<<...>>>>>.......<<<<<.<<<<<<<. GTCAGTATGGCCGAGTGGTtA.AGGCGCCAGATTTGAAATCTGTT.ACGA.GTAT......TCGTG.CGTAGGTTCAAATCCTGC.TGCTGACG tRNA-Ser-TGA-1-1 Sc: 64.8 >>>>>>>..>>>...........<<<..>>>>.......<<<<....>>.............<<....>>>>>.......<<<<<.<<<<<<<. GACAATGTGGTGGAGTGGTtA.ACACGTTGGATTGCTAATCCA.TGCCTT.TAT.......TGGTG.CGCGAGTTCGAATCTCGT.CATTGTCG tRNA-Ser-GCT-1-1 Sc: 55.8
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GGCTGCATAGCTTAGT.GGTA.GAGCGTCTCCCTAGTAAGGAGAAG...........GtCGAGAGTTCGACTCTCTCTGTAGCCT tRNA-Thr-AGT-1-1 Sc: 77.1 GGCTGCATAGCTTAGT.GGTA.GAGCGTCTCCCTAGTAAGGAGAAG...........GtCGAGAGTTCGACTCTCTCTGTAGCCT tRNA-Thr-AGT-1-2 Sc: 77.1 GGCTGCATAGCTTAGT.GGTA.GAGCGTCTCCCTAGTAAGGAGAAG...........GtCGAGAGTTCGACTCTCTCTGTAGCCT tRNA-Thr-AGT-1-3 Sc: 77.1 >>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<. GGCTTACTAGCTTAGTCGGTA.GAGCAGTGCTTTCGTAAAGCAAAG...........GtCGAGGGTTCGATTCCCTCGTGAGCCT tRNA-Thr-CGT-1-1 Sc: 64.9 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCCACCTTAGCTTAGT.GGTA.AAGCGCTAGTCTTGTAAACTAGAG...........AgCATGGGTTCGATCCCCATAGGTGGCT tRNA-Thr-TGT-1-1 Sc: 80.8
Trp tRNAs
>>>>>>>..>>>>........<<<<.>>.>>.......<<.<<................>>>>>.......<<<<<<<<<<<<. GACCGGATGGCGCAATGGTA.GCGCGTGTGATTCCAGATCTCAAG...........GtTGCAGGTTCAATCCCTGCTTCGGTCA tRNA-Trp-CCA-1-1 Sc: 77.1 GACCGGATGGCGCAATGGTA.GCGCGTGTGATTCCAGATCTCAAG...........GtTGCAGGTTCAATCCCTGCTTCGGTCA tRNA-Trp-CCA-1-2 Sc: 77.1
Tyr tRNAs
>>>>>>>..>>>>........<<<<.>>>>>..................<<<<<................>>>>>.......<<<<<<<<<<<<. CTCGCAATAGCTCAGTGGTA.GAGCGGGAGACTGTAGagtttgctgatATCTCTAG...........GcCGCTGGTTCGACTCCAGCTTGCGAGA tRNA-Tyr-GTA-1-1 Sc: 74.8 CTCGCAATAGCTCAGTGGTA.GAGCGGGAGACTGTAGagtttgctgatATCTCTAG...........GcCGCTGGTTCGACTCCAGCTTGCGAGA tRNA-Tyr-GTA-1-2 Sc: 74.8
Val tRNAs
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GTGCTATTAGTGTAGTGGTtA.TCACGTTCGCCTAACACGCGGAAG...........GtCCTCGGTTCAAACCCGAGATGGCACA tRNA-Val-AAC-1-1 Sc: 71.6 GTGCTATTAGTGTAGTGGTtA.TCACGTTCGCCTAACACGCGGAAG...........GtCCTCGGTTCAAACCCGAGATGGCACA tRNA-Val-AAC-1-2 Sc: 71.6 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCTTTTGTAGTGTAGTGGTtA.TCACGCAACCTTCACACGGTTGAG...........GtCCCCGGTTCGATCCCGGGCGGAAGCA tRNA-Val-CAC-1-1 Sc: 72.2 GCTTTTGTAGTGTAGTGGTtA.TCACGCAACCTTCACACGGTTGAG...........GtCCCCGGTTCGATACCGGGCGGAAGCA tRNA-Val-CAC-2-1 Sc: 68.7 >>>>>>>..>>>...........<<<.>.>>>.......<<<.<................>>>>>.......<<<<<<<<<<<<. GCCCCTGTAGTGTAGTGGTtA.TCACGTCTCCTTTACACGGAAAAG...........GtCCCCGGTTCGAACCCGGGCGGGGGCA tRNA-Val-TAC-1-1 Sc: 73.1