tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Sun Aug 20 18:07:39 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         13
Seqs w/at least 1 hit:  13
Bases read:             34247354 (x2 for both strands)
Bases in tRNAs:         15319
tRNAs predicted:        157
Av. tRNA length:        97
Script CPU time:        3.29 s
Scan CPU time:          151.10 s
Scan speed:             453.3 Kbp/sec

First pass search(es) ended: Sun Aug 20 18:07:55 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     157
Infernal-confirmed tRNAs:     150
Bases scanned by Infernal:  18459
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.30 s
Infernal CPU time:            115.06 s
Scan speed:               160.4 bp/sec

Infernal analysis of tRNAs ended: Sun Aug 20 18:10:04 PDT 2017

Overall scan speed: 252981.4 bp/sec