tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Sun Aug 20 18:46:51 PDT 2017

------------------------------------------------------------
Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass Stats:
---------------
Sequences read:         349
Seqs w/at least 1 hit:  92
Bases read:             34604268 (x2 for both strands)
Bases in tRNAs:         22998
tRNAs predicted:        272
Av. tRNA length:        84
Script CPU time:        4.80 s
Scan CPU time:          178.53 s
Scan speed:             387.7 Kbp/sec

First pass search(es) ended: Sun Aug 20 18:49:39 PDT 2017

Infernal Stats:
-----------
Candidate tRNAs read:     272
Infernal-confirmed tRNAs:     269
Bases scanned by Infernal:  28438
% seq scanned by Infernal:  0.0 %
Script CPU time:          3.85 s
Infernal CPU time:            226.07 s
Scan speed:               125.8 bp/sec

Infernal analysis of tRNAs ended: Sun Aug 20 18:54:40 PDT 2017

Overall scan speed: 167473.8 bp/sec