tRNA Gene Summary

Overview
High confidence set 428
tRNAs decoding standard 20 AA 427
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 229
Unexpected anticodons 46
Non-canonical anticodon loop length 17
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 194977
Secondary filter (low feature scores, possible rep. element) 13916
Tertiary filter (excessive isotype copies, possible rep. element) 2879

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 29)
Arg TCT
5
Leu CAA
6
Ile TAT
5
Tyr GTA
13
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
21
GGC
 
CGC
6
TGC
11
38
GlyACC
 
GCC
14
CCC
3
TCC
7
24
ProAGG
8
GGG
 
CGG
4
TGG
4
16
ThrAGT
12
GGT
 
CGT
4
TGT
6
22
ValAAC
12
GAC
 
CAC
12
TAC
4
28
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
11
GGA
 
CGA
4
TGA
4
ACT
 
GCT
10
 
 
 
 
29
ArgACG
9
GCG
 
CCG
3
TCG
6
 
 
 
 
CCT
6
TCT
6
30
LeuAAG
6
GAG
 
CAG
5
TAG
4
 
 
 
 
CAA
7
TAA
5
27
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
13
 
 
 
 
13
AsnATT
 
GTT
22
 
 
 
 
22
Lys 
 
 
 
CTT
10
TTT
14
24
AspATC
 
GTC
20
 
 
 
 
20
Glu 
 
 
 
CTC
8
TTC
28
36
HisATG
 
GTG
10
 
 
 
 
10
Gln 
 
 
 
CTG
9
TTG
5
14
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
11
GAT
 
CAT
 
TAT
5
16
iMet/Met 
 
 
 
CAT
9/9
 
 
18
TyrATA
 
GTA
13
 
 
 
 
13
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
20
 
 
 
 
20
Trp 
 
 
 
CCA
7
 
 
7
SelCys 
 
 
 
 
 
TCA
1
1