tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Sun Aug 20 19:18:18 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         237
Seqs w/at least 1 hit:  41
Bases read:             33697794 (x2 for both strands)
Bases in tRNAs:         11644
tRNAs predicted:        126
Av. tRNA length:        92
Script CPU time:        4.00 s
Scan CPU time:          161.77 s
Scan speed:             416.6 Kbp/sec

First pass search(es) ended: Sun Aug 20 19:20:07 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     126
Infernal-confirmed tRNAs:     123
Bases scanned by Infernal:  14164
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.81 s
Infernal CPU time:            107.28 s
Scan speed:               132.0 bp/sec

Infernal analysis of tRNAs ended: Sun Aug 20 19:22:26 PDT 2017

Overall scan speed: 245199.7 bp/sec