tRNA Gene Summary

Overview
High confidence set 445
tRNAs decoding standard 20 AA 442
Selenocysteine tRNAs (TCA) 3
Notable atypical predictions  
Anticodon/isotype mismatch 5
Non-canonical anticodon loop length 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 1872
Secondary filter (low feature scores, possible rep. element) 121

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 42)
Pro AGG
1
Arg CCT
1
Arg TCT
6
Leu CAA
6
Phe GAA
4
Lys TTT
10
Ile TAT
3
Tyr GTA
11
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
15
GGC
 
CGC
7
TGC
8
30
GlyACC
 
GCC
19
CCC
8
TCC
13
40
ProAGG
9
GGG
 
CGG
4
TGG
9
22
ThrAGT
12
GGT
 
CGT
5
TGT
8
25
ValAAC
10
GAC
 
CAC
10
TAC
5
25
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
8
GGA
 
CGA
2
TGA
6
ACT
 
GCT
8
 
 
 
 
24
ArgACG
11
GCG
 
CCG
4
TCG
6
 
 
 
 
CCT
5
TCT
6
32
LeuAAG
7
GAG
 
CAG
12
TAG
4
 
 
 
 
CAA
6
TAA
2
31
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
9
 
 
 
 
9
AsnATT
 
GTT
12
 
 
 
 
12
Lys 
 
 
 
CTT
24
TTT
10
34
AspATC
 
GTC
17
 
 
 
 
17
Glu 
 
 
 
CTC
41
TTC
10
51
HisATG
 
GTG
12
 
 
 
 
12
Gln 
 
 
 
CTG
11
TTG
4
15
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
3
GAT
5
CAT
 
TAT
3
11
iMet/Met 
 
 
 
CAT
16/12
 
 
28
TyrATA
 
GTA
11
 
 
 
 
11
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
7
 
 
 
 
7
Trp 
 
 
 
CCA
6
 
 
6
SelCys 
 
 
 
 
 
TCA
3
3