tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Sun Aug 20 22:25:43 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         3282
Seqs w/at least 1 hit:  211
Bases read:             71515325 (x2 for both strands)
Bases in tRNAs:         39108
tRNAs predicted:        451
Av. tRNA length:        86
Script CPU time:        13.06 s
Scan CPU time:          705.98 s
Scan speed:             202.6 Kbp/sec

First pass search(es) ended: Sun Aug 20 22:43:28 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     451
Infernal-confirmed tRNAs:     210
Bases scanned by Infernal:  48122
% seq scanned by Infernal:  0.0 %
Script CPU time:          5.16 s
Infernal CPU time:            262.21 s
Scan speed:               183.5 bp/sec

Infernal analysis of tRNAs ended: Sun Aug 20 22:50:09 PDT 2017

Overall scan speed: 145001.2 bp/sec