tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 119
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 6
Predicted pseudogenes 85
Total tRNAs 210
Intron Summary (tRNAs with introns: 67)
Ala AGC
3
Ala TGC
2
Gly GCC
3
Gly CCC
1
Pro AGG
2
Pro CGG
1
Pro TGG
2
Thr GGT
1
Thr TGT
1
Val CAC
1
Val TAC
1
Ser AGA
3
Ser CGA
1
Ser TGA
1
Ser GCT
2
Arg ACG
3
Arg CCG
1
Arg CCT
1
Arg TCT
2
Leu AAG
6
Leu CAG
1
Leu TAG
1
Leu CAA
1
Leu TAA
1
Phe GAA
3
Lys CTT
3
Asp GTC
6
Gln TTG
2
Ile TAT
1
Met CAT
2
Tyr GTA
3
Cys GCA
1
Trp CCA
4
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 206936

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
3
GGC
 
CGC
2
TGC
5
10
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
3
CCC
1
TCC
1
5
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
2
GGG
 
CGG
1
TGG
15
18
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
4
GGT
1
CGT
1
TGT
1
7
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
3
GAC
 
CAC
1
TAC
5
9
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
3
GGA
 
CGA
1
TGA
2
ACT
 
GCT
2
 
 
 
 
8
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
6
GCG
 
CCG
1
TCG
2
 
 
 
 
CCT
1
TCT
3
13
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
9
GAG
 
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
4
16
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
6
 
 
 
 
6
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
6
 
 
 
 
6
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
3
TTT
3
6
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
9
 
 
 
 
9
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
3
TTC
6
9
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
4
 
 
 
 
4
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
2
TTG
2
4
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
3
GAT
 
 
 
TAT
1
4
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
2/7
 
 
9
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
5
 
 
 
 
5
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
5
 
 
 
 
5
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
6
 
 
6
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
-