tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Mon Aug 21 07:13:32 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1867
Seqs w/at least 1 hit:  201
Bases read:             158944908 (x2 for both strands)
Bases in tRNAs:         40935
tRNAs predicted:        477
Av. tRNA length:        85
Script CPU time:        22.51 s
Scan CPU time:          800.64 s
Scan speed:             397.0 Kbp/sec

First pass search(es) ended: Mon Aug 21 07:25:29 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     477
Infernal-confirmed tRNAs:     428
Bases scanned by Infernal:  50475
% seq scanned by Infernal:  0.0 %
Script CPU time:          7.26 s
Infernal CPU time:            380.49 s
Scan speed:               132.7 bp/sec

Infernal analysis of tRNAs ended: Mon Aug 21 07:34:29 PDT 2017

Overall scan speed: 262523.6 bp/sec