tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 406
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 22
Total tRNAs 428
Intron Summary (tRNAs with introns: 312)
Ala AGC
11
Ala CGC
5
Gly GCC
16
Gly CCC
5
Pro AGG
9
Pro GGG
1
Pro CGG
3
Pro TGG
14
Thr AGT
11
Thr CGT
4
Thr TGT
7
Val CAC
4
Val TAC
5
Ser AGA
10
Ser CGA
2
Ser TGA
4
Ser GCT
8
Arg CCG
3
Arg CCT
4
Arg TCT
6
Leu AAG
12
Leu CAG
3
Leu TAG
8
Leu CAA
6
Leu TAA
6
Phe GAA
16
Asn GTT
13
Lys CTT
11
Asp ATC
1
Asp GTC
19
Glu CTC
11
Glu TTC
8
His GTG
10
Gln CTG
6
Gln TTG
6
Ile TAT
6
Met CAT
8
Tyr GTA
18
Cys ACA
1
Cys GCA
11

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 115257

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
11
GGC
 
CGC
5
TGC
19
35
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
16
CCC
5
TCC
8
29
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
9
GGG
1
CGG
3
TGG
14
27
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
11
GGT
 
CGT
4
TGT
7
22
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
12
GAC
1
CAC
4
TAC
5
22
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
10
GGA
 
CGA
3
TGA
5
ACT
 
GCT
8
 
 
 
 
26
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
9
GCG
 
CCG
3
TCG
12
 
 
 
 
CCT
4
TCT
6
34
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
12
GAG
 
CAG
3
TAG
8
 
 
 
 
CAA
6
TAA
6
35
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
16
 
 
 
 
16
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
13
 
 
 
 
13
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
11
TTT
10
21
 
 
 
 
AAG
0
AAA
0
0%
AspATC
1
GTC
19
 
 
 
 
20
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
11
TTC
10
21
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
10
 
 
 
 
10
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
6
TTG
6
12
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
15
GAT
 
 
 
TAT
6
21
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
15/8
 
 
23
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
18
 
 
 
 
18
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
1
GCA
11
 
 
 
 
12
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
8
 
 
8
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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