tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (Sept 2017) scan results 
Started: Fri Nov 17 19:23:07 PST 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         100
Seqs w/at least 1 hit:  33
Bases read:             14889980 (x2 for both strands)
Bases in tRNAs:         11041
tRNAs predicted:        127
Av. tRNA length:        86
Script CPU time:        1.97 s
Scan CPU time:          58.60 s
Scan speed:             508.2 Kbp/sec

First pass search(es) ended: Fri Nov 17 19:23:54 PST 2017

Infernal Stats:
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Candidate tRNAs read:     127
Infernal-confirmed tRNAs:     127
Bases scanned by Infernal:  13581
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.67 s
Infernal CPU time:            99.33 s
Scan speed:               136.7 bp/sec

Infernal analysis of tRNAs ended: Fri Nov 17 19:26:30 PST 2017

Overall scan speed: 184316.1 bp/sec