tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 198
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 2
Total tRNAs 201
Intron Summary (tRNAs with introns: 80)
Pro AGG
1
Pro TGG
7
Thr CGT
1
Thr TGT
2
Ser CGA
1
Ser TGA
3
Ser GCT
3
Arg ACG
2
Arg CCG
1
Arg CCT
1
Leu AAG
2
Leu CAG
1
Leu CAA
6
Leu TAA
5
Phe GAA
8
Lys CTT
5
Lys TTT
2
Glu TTC
11
His GTG
4
Ile TAT
2
Tyr GTA
5
Cys GCA
2
Trp CCA
5
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 6254
Number of Codons: 3036230

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
9
GGC
 
CGC
 
TGC
5
14
GCT
2.41
GCC
0.84
GCG
0.2
GCA
1.58
5.03%
GlyACC
 
GCC
9
CCC
 
TCC
4
13
GGT
2.83
GGC
0.3
GGG
0.48
GGA
1.46
5.07%
ProAGG
1
GGG
 
CGG
 
TGG
7
8
CCT
1.28
CCC
0.24
CCG
0.26
CCA
2.75
4.53%
ThrAGT
8
GGT
 
CGT
1
TGT
3
12
ACT
2.78
ACC
1.09
ACG
0.29
ACA
1.82
5.98%
ValAAC
11
GAC
 
CAC
 
TAC
1
12
GTT
3.17
GTC
0.78
GTG
0.74
GTA
0.93
5.62%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
7
GGA
 
CGA
1
TGA
4
ACT
 
GCT
3
 
 
 
 
15
TCT
2.2
TCC
0.98
TCG
0.46
TCA
2.72
AGT
1.87
AGC
0.38
 
 
 
 
8.61%
ArgACG
2
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
9
13
CGT
0.6
CGC
0.06
CGG
0.05
CGA
0.35
 
 
 
 
AGG
0.26
AGA
2.49
3.81%
LeuAAG
2
GAG
 
CAG
1
TAG
1
 
 
 
 
CAA
6
TAA
6
16
CTT
1.17
CTC
0.24
CTG
0.4
CTA
0.48
 
 
 
 
TTG
3.43
TTA
3.79
9.51%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
9
 
 
 
 
9
TTT
2.95
TTC
1.54
 
 
 
 
4.49%
AsnATT
 
GTT
8
 
 
 
 
8
AAT
4.62
AAC
1.63
 
 
 
 
6.25%
Lys 
 
 
 
CTT
5
TTT
9
14
 
 
 
 
AAG
2.2
AAA
5
7.2%
AspATC
 
GTC
10
 
 
 
 
10
GAT
4.9
GAC
1.06
 
 
 
 
5.96%
Glu 
 
 
 
CTC
1
TTC
11
12
 
 
 
 
GAG
1.13
GAA
5.6
6.73%
HisATG
 
GTG
4
 
 
 
 
4
CAT
1.61
CAC
0.46
 
 
 
 
2.07%
Gln 
 
 
 
CTG
1
TTG
7
8
 
 
 
 
CAG
0.66
CAA
3.6
4.26%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
9
GAT
1
 
 
TAT
2
12
ATT
4.24
ATC
1.36
 
 
ATA
1.45
7.05%
iMet/Met 
 
 
 
CAT
3/4
 
 
7
 
 
 
 
ATG
1.88
 
 
1.88%
TyrATA
 
GTA
5
 
 
 
 
5
TAT
2.6
TAC
0.95
 
 
 
 
3.55%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.04
TAG
0.08
TAA
0.11
0.23%
CysACA
 
GCA
2
 
 
 
 
2
TGT
0.9
TGC
0.15
 
 
 
 
1.05%
Trp 
 
 
 
CCA
5
 
 
5
 
 
 
 
TGG
0.99
 
 
0.99%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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