tRNA Gene Summary

Overview
High confidence set 961
tRNAs decoding standard 20 AA 958
Selenocysteine tRNAs (TCA) 3
Notable atypical predictions  
Anticodon/isotype mismatch 83
Unexpected anticodons 4
Non-canonical anticodon loop length 6
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 203
Secondary filter (low feature scores, possible rep. element) 113

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 46)
Leu CAA
14
Ile TAT
6
Tyr GTA
26
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
34
GGC
 
CGC
6
TGC
10
50
GlyACC
 
GCC
32
CCC
 
TCC
67
99
ProAGG
11
GGG
 
CGG
8
TGG
51
70
ThrAGT
32
GGT
 
CGT
9
TGT
14
55
ValAAC
33
GAC
 
CAC
11
TAC
8
52
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
20
GGA
 
CGA
8
TGA
12
ACT
 
GCT
11
 
 
 
 
51
ArgACG
32
GCG
 
CCG
15
TCG
16
 
 
 
 
CCT
6
TCT
12
81
LeuAAG
32
GAG
 
CAG
8
TAG
8
 
 
 
 
CAA
14
TAA
6
68
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
23
 
 
 
 
23
AsnATT
 
GTT
32
 
 
 
 
32
Lys 
 
 
 
CTT
49
TTT
22
71
AspATC
 
GTC
32
 
 
 
 
32
Glu 
 
 
 
CTC
37
TTC
32
69
HisATG
 
GTG
24
 
 
 
 
24
Gln 
 
 
 
CTG
11
TTG
35
46
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
33
GAT
 
CAT
 
TAT
6
39
iMet/Met 
 
 
 
CAT
12/16
 
 
28
TyrATA
 
GTA
26
 
 
 
 
26
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
20
 
 
 
 
20
Trp 
 
 
 
CCA
22
 
 
22
SelCys 
 
 
 
 
 
TCA
3
3