tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc1 (August 2016) scan results (on host hoag.soe.ucsc.edu)
Started: Fri Oct 14 21:02:11 PDT 2016

------------------------------------------------------------
Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass Stats:
---------------
Sequences read:         7
Seqs w/at least 1 hit:  6
Bases read:             100286401 (x2 for both strands)
Bases in tRNAs:         65365
tRNAs predicted:        881
Av. tRNA length:        74
Script CPU time:        9.43 s
Scan CPU time:          413.83 s
Scan speed:             484.7 Kbp/sec

First pass search(es) ended: Fri Oct 14 21:02:40 PDT 2016

Infernal Stats:
-----------
Candidate tRNAs read:     881
Infernal-confirmed tRNAs:     721
Bases scanned by Infernal:  82985
% seq scanned by Infernal:  0.0 %
Script CPU time:          4.66 s
Infernal CPU time:            298.63 s
Scan speed:               277.9 bp/sec

Infernal analysis of tRNAs ended: Fri Oct 14 21:11:08 PDT 2016

Overall scan speed: 276061.9 bp/sec