tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (Sept 2017) scan results 
Started: Sun Oct 29 19:22:33 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         7
Seqs w/at least 1 hit:  6
Bases read:             100286401 (x2 for both strands)
Bases in tRNAs:         65365
tRNAs predicted:        881
Av. tRNA length:        74
Script CPU time:        10.34 s
Scan CPU time:          420.67 s
Scan speed:             476.8 Kbp/sec

First pass search(es) ended: Sun Oct 29 19:23:04 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     881
Infernal-confirmed tRNAs:     721
Bases scanned by Infernal:  82985
% seq scanned by Infernal:  0.0 %
Script CPU time:          5.18 s
Infernal CPU time:            453.89 s
Scan speed:               182.8 bp/sec

Infernal analysis of tRNAs ended: Sun Oct 29 19:31:12 PDT 2017

Overall scan speed: 225342.4 bp/sec