tRNA Gene Summary

Overview
Quality set 568
tRNAs decoding standard 20 AA 567
Selenocysteine tRNAs (TCA) 1
Filtered tRNA and tRNA-like predictions based on  
Low feature scores (tRNAscan-SE pseudogenes) 103
Non-canonical anticodon loop length 2
Anticodon/isotype mismatch 19
Unexpected anticodons 1
Below quality score criteria 28
Intron Summary (tRNAs with introns: 29)
Ala AGC
1
Leu CAA
7
Ile TAT
3
Tyr GTA
18

The codon usage of this genome was obtained from the Codon Usage Database.
Number of CDS: 24994
Number of Codons: 11197796

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
20
GGC
 
CGC
4
TGC
8
32
GCT
2.24
GCC
1.26
GCG
0.82
GCA
1.98
6.3%
GlyACC
 
GCC
14
CCC
 
TCC
35
49
GGT
1.09
GGC
0.67
GGG
0.44
GGA
3.17
5.37%
ProAGG
6
GGG
 
CGG
4
TGG
30
40
CCT
0.88
CCC
0.44
CCG
0.97
CCA
2.61
4.9%
ThrAGT
16
GGT
 
CGT
7
TGT
9
32
ACT
1.89
ACC
1.04
ACG
0.89
ACA
2
5.82%
ValAAC
19
GAC
 
CAC
6
TAC
5
30
GTT
2.41
GTC
1.36
GTG
1.43
GTA
0.98
6.18%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
15
GGA
 
CGA
6
TGA
9
ACT
 
GCT
9
 
 
 
 
39
TCT
1.67
TCC
1.06
TCG
1.22
TCA
2.06
AGT
1.21
AGC
0.84
 
 
 
 
8.06%
ArgACG
19
GCG
 
CCG
1
TCG
8
 
 
 
 
CCT
2
TCT
8
38
CGT
1.12
CGC
0.51
CGG
0.47
CGA
1.21
 
 
 
 
AGG
0.4
AGA
1.54
5.25%
LeuAAG
18
GAG
 
CAG
5
TAG
3
 
 
 
 
CAA
7
TAA
3
36
CTT
2.12
CTC
1.48
CTG
1.21
CTA
0.79
 
 
 
 
TTG
2
TTA
0.98
8.58%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
14
 
 
 
 
14
TTT
2.33
TTC
2.39
 
 
 
 
4.72%
AsnATT
 
GTT
19
 
 
 
 
19
AAT
3.02
AAC
1.83
 
 
 
 
4.85%
Lys 
 
 
 
CTT
29
TTT
14
43
 
 
 
 
AAG
2.58
AAA
3.75
6.33%
AspATC
 
GTC
27
 
 
 
 
27
GAT
3.58
GAC
1.71
 
 
 
 
5.29%
Glu 
 
 
 
CTC
24
TTC
17
41
 
 
 
 
GAG
2.45
GAA
4.08
6.53%
HisATG
 
GTG
16
 
 
 
 
16
CAT
1.41
CAC
0.92
 
 
 
 
2.33%
Gln 
 
 
 
CTG
7
TTG
19
26
 
 
 
 
CAG
1.44
CAA
2.74
4.18%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
21
GAT
 
 
 
TAT
3
24
ATT
3.22
ATC
1.89
 
 
ATA
0.95
6.06%
Met 
 
 
 
CAT
18
 
 
18
 
 
 
 
ATG
2.61
 
 
2.61%
TyrATA
 
GTA
18
 
 
 
 
18
TAT
1.75
TAC
1.37
 
 
 
 
3.12%
Supres 
 
 
 
CTA
 
TTA
 
0
Stop 
 
 
 
TAG
0.06
TAA
0.16
0.22%
CysACA
 
GCA
13
 
 
 
 
13
TGT
1.12
TGC
0.91
 
 
 
 
2.03%
Trp 
 
 
 
CCA
12
 
 
12
 
 
 
 
TGG
1.11
 
 
1.11%
SelCys 
 
 
 
 
 
TCA
1
1
Stop 
 
 
 
 
 
TGA
0.14
0.14%