tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 71
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 10
Predicted pseudogenes 15
Total tRNAs 96
Intron Summary (tRNAs with introns: 50)
Ala AGC
1
Ala GGC
1
Ala CGC
1
Ala TGC
1
Gly GCC
3
Pro AGG
2
Pro CGG
1
Pro TGG
1
Thr AGT
2
Thr CGT
2
Thr TGT
2
Val CAC
1
Val TAC
1
Ser CGA
1
Ser TGA
1
Ser GCT
1
Arg ACG
2
Arg TCG
1
Arg CCT
1
Leu AAG
2
Leu CAG
2
Leu TAG
1
Leu CAA
1
Leu TAA
1
Phe GAA
2
Lys CTT
2
Lys TTT
1
His ATG
1
His GTG
1
Gln TTG
1
Ile AAT
2
Ile TAT
1
Met CAT
2
Tyr GTA
2
Trp CCA
2
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 72750

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
1
GGC
1
CGC
1
TGC
1
4
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
4
CCC
1
TCC
1
6
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
2
GGG
 
CGG
1
TGG
1
4
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
2
GGT
 
CGT
2
TGT
2
6
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
3
GAC
 
CAC
1
TAC
1
5
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
1
GGA
 
CGA
1
TGA
1
ACT
 
GCT
1
 
 
 
 
4
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
2
GCG
 
CCG
1
TCG
1
 
 
 
 
CCT
1
TCT
1
6
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
2
GAG
 
CAG
2
TAG
1
 
 
 
 
CAA
1
TAA
1
7
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
2
 
 
 
 
2
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
2
TTT
1
3
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
2
 
 
 
 
2
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
3
TTC
1
4
 
 
 
 
GAG
0
GAA
0
0%
HisATG
1
GTG
2
 
 
 
 
3
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
1
TTG
1
2
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
2
GAT
 
 
 
TAT
1
3
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
2/2
 
 
4
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
3
 
 
 
 
3
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
2
 
 
2
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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