tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.1 (March 2018) scan results 
Started: Tue Jan 15 15:13:58 PST 2019

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Mito isotype model scan:           mammal
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         269084
Seqs w/at least 1 hit:  597
Bases read:             3286013499 (x2 for both strands)
Bases in tRNAs:         74482
tRNAs predicted:        944
Av. tRNA length:        78
Script CPU time:        587.63 s
Scan CPU time:          49499.12 s
Scan speed:             132.8 Kbp/sec

First pass search(es) ended: Wed Jan 16 14:24:18 PST 2019

Infernal Stats:
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Candidate tRNAs read:     944
Infernal-confirmed tRNAs:     584
Bases scanned by Infernal:  93248
% seq scanned by Infernal:  0.0 %
Script CPU time:          12.69 s
Infernal CPU time:            709.61 s
Scan speed:               131.4 bp/sec

Infernal analysis of tRNAs ended: Wed Jan 16 14:45:56 PST 2019

Overall scan speed: 129347.6 bp/sec