tRNA Gene Summary

Overview
High confidence set 896
tRNAs decoding standard 20 AA 895
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 11
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 202
Secondary filter (low feature scores, possible rep. element) 111

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 40)
Leu CAA
9
Ile TAT
5
Tyr GTA
26
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
32
GGC
 
CGC
8
TGC
12
52
GlyACC
 
GCC
39
CCC
 
TCC
57
96
ProAGG
9
GGG
 
CGG
9
TGG
47
65
ThrAGT
25
GGT
 
CGT
9
TGT
10
44
ValAAC
29
GAC
 
CAC
13
TAC
6
48
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
20
GGA
 
CGA
16
TGA
8
ACT
 
GCT
16
 
 
 
 
60
ArgACG
24
GCG
 
CCG
 
TCG
14
 
 
 
 
CCT
3
TCT
12
53
LeuAAG
26
GAG
 
CAG
11
TAG
5
 
 
 
 
CAA
9
TAA
4
55
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
28
 
 
 
 
28
AsnATT
 
GTT
30
 
 
 
 
30
Lys 
 
 
 
CTT
44
TTT
30
74
AspATC
 
GTC
40
 
 
 
 
40
Glu 
 
 
 
CTC
40
TTC
23
63
HisATG
 
GTG
19
 
 
 
 
19
Gln 
 
 
 
CTG
15
TTG
20
35
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
27
GAT
 
CAT
 
TAT
5
32
iMet/Met 
 
 
 
CAT
20/18
 
 
38
TyrATA
 
GTA
26
 
 
 
 
26
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
17
 
 
 
 
17
Trp 
 
 
 
CCA
20
 
 
20
SelCys 
 
 
 
 
 
TCA
1
1