Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

Ala tRNAs
>>>>>>>..>>>................<<<.>>>>>....................................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GGGGATATGGTTTAGTG.....GT.A.TAACGCTTCTTTAGCA.............................................................TAGAAGAG...........GtCTGGGGTTCGATTCCCCATATCTCCA tRNA-Ala-AGC-1-1 Sc: 69.3 >>>>>>>..>>>................<<<.>>>>>....................................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GGGCTCTTGGTCTAGGG.....GT.A.TGATTTTCGCTTCGCAttacaaaaatgtcact.............................................TGTGAAAG...........GtCGTGGGTTCAATTCCCACAGGGTCCA tRNA-Ala-CGC-1-1 Sc: 57.2 >>>>>>>..>.>................<.<.>>>>......................................................................<<<<................>>>>>.......<<<<<<<<<<<<. GGGGATATAGCTCAGTGggtatGTtA.CAATTTCTG.TTGAAGggaataaagttatgctaacccctatttagtagagcgcctgctttgcatatcgtagaatatcTGCAGGAG...........GtCTGGGGTTCGATACCCCATATCTCCA tRNA-Ala-TGC-1-1 Sc: 33.1
Arg tRNAs
>>>>>>>..>>>...........<<<.>>>>>..............................<<<<<.................>>>>>.......<<<<<<<<<<<<. GGACGTGTGGCCCAATGGC.A.AGGCGCTTGACTACGA.......................ATCAAGAG...........At.TCACGGTTCGATCCCGTGCACGTTCA tRNA-Arg-ACG-1-1 Sc: 69.3 >..>>>>..>>>>.........<<<<.>>>>>..............................<<<<<.................>>>>>.......<<<<<<<<<..<. G..ACCATGGCCTAATGGC.A.AGGCGTTGCTTTCCGG.......................TGGCAAAG...........At.TGGGAGTTCGAGTCTCCCTGGTATCG tRNA-Arg-CCG-1-1 Sc: 41.8 >>>>>>>..>>>>.........<<<<.>>>>>..............................<<<<<.................>>>>>.......<<<<<<<<<<<<. GGCCGCGTGGCCTAATGGTtA.AGGCGTTGGTTTTCGG.......................CACCAAAG...........AttTGTGCGTTCGAATCGCACCGTGGTCG tRNA-Arg-TCG-1-1 Sc: 61.6 >>>>>>>..>>>>.........<<<<.>>>>>..............................<<<<<.................>>>>>.......<<<<<<<<<<<<. GGGTGGTTGGCGCAATGGT.A.GCGCGTGTCTCTCCTAtcaatttagatttaaatgatatcAAGACAAG...........Gt.TGAGGGTTCGAGTCCCTTGCTACTCG tRNA-Arg-CCT-1-1 Sc: 53.1
Asn tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GTCTTCGTGGCGCAATCGGTtAGCGCGTCCGACTGTTAATCGGGAG...........GtTGACAGTTCAATCCTGTCCGAGGACG tRNA-Asn-GTT-1-1 Sc: 75.3
Asp tRNAs
>>>.>>>..>>>...........<<<.>>>>>..................<<<<<...............>>>>>.......<<<<<<<<.<<<. TCCCCGATGGTCTAGTGGTcA.TGATTTCCGCTTGTCAgtaatgccaagCGCGGGAG...........ACCGGGGTTCGATTCCCCGTCGAGGAG tRNA-Asp-GTC-1-1 Sc: 61.2
Cys tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>..................<<<<<................>>>>>.......<<<<<<<<<<<<. GCCCGAATAGCTCAGCGGTtA.GAGCGAGAGATTGCAGcaaggcttcatATCTCTAG...........GtCCATCGTTCGAATCGGTGTTCGGGCT tRNA-Cys-GCA-1-1 Sc: 66.7
Gln tRNAs
>>>>>>>..>>>...........<<<.>>>>>.....................<<<<<...............>>>>>.......<<<<<<<<<<<<. GGTTCTGTAGTGTAGCGGTcA.TCACATTCGGTTCTGAttaattggtcaaaaTCCGAATA...........ACCCCGGTTCGAATCCGGGCAGGACCT tRNA-Gln-CTG-1-1 Sc: 60.6 >>>>>>>..>>>...........<<<.>>>>>.....................<<<<<...............>>>>>.......<<<<<<<<<<<<. GGTTTTGTAGTGTAGTGGTtA.TCACTCCGGATTTTGAtaggtcaaaca...TTCCGGCA...........ACCCCAGTTCGAATCTGGGCAAGACCT tRNA-Gln-TTG-1-1 Sc: 58.3
Glu tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.........................<<<<<...............>>>>>.......<<<<<<<<<<<<. TCCGAAATGGTCTAGTGGTtA.GGATATCCGCCTCTCActactgagggttcagtt.CGCGGATG...........GCCGGGGTTCGATTCCCCGTTTCGGAA tRNA-Glu-CTC-1-1 Sc: 69.5 >>>>>>>..>>>>.........<<<<.>>>>>.........................<<<<<...............>>>>>.......<<<<<<<<<<<<. TCCGAAGTGGTGTAGTGGTtA.GCATACGACGCTTTCAttggatcaaccaaaaattCCGTCGCG...........ACCGGGGTTCGATTCCCCGTTTCGGAA tRNA-Glu-TTC-1-1 Sc: 59.1
Gly tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. GCGTCAGTGGTTTAGTGGTA.AAATTCGTCGTTGCCATCGACGAG...........CCGGGGGTTCGATTCCCTCCTGACGCA tRNA-Gly-GCC-1-1 Sc: 66.0 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<. GCGACAATAGTTCAAGGGTA.GAATTCGAGCTTCCCATGCTCGAG...........GTCTGGGTTCGAGTCCCAGTTGTCGCA tRNA-Gly-CCC-1-1 Sc: 68.6
His tRNAs
>>>>>>>..>>>..........<<<..>>>>.................<<<<................>>>>>.......<<<<<<<<<<<<. GGAGATGTGGTGTAGTGGTA.TCACGTAACGTTGTGGtcacgcaaatCCGTTCCG...........ACCCCGGTTCGATTCCGGGCATCTCCA tRNA-His-GTG-1-1 Sc: 51.6
Ile tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>....................................................................................................<<<<<................>>>>>.......<<<<<<<<<<<<. GGTCGGTTAACTCAGTTGGTtA.GAGTGTGGTGCTAATA...........................................................................................A..CGCCAAA...........GtCGAGGGTTCGACCCCCTCACTGACCA tRNA-Ile-AAT-1-1 Sc: 71.5 GCCCGGGTAGTTCAAT.GGT.A.GAATATCGGATCAATAtcttggttcggggtagtccctccgacaagcacaaaatcccgcgggtagcttgtgttgtgtcctgggttcgccccgtgttccggactgatcaC..TCTGATG...........A.TTGTGGTTCGAATCCACATCTGGGCG tRNA-Ile-AAT-3-1 Sc: 45.1 GCCCAGATGGTTCAAT.GGT.A.GAACGTCAGG..GAAAtgctgggtcggggtcgctccctagtcttcttgaccgcaacatcatgttgattggactcgaggactcccggattggcca.............A..CCTGAAG...........A.TTGTGGTTCGAATCCATGTCTGGGCA tRNA-Ile-AAT-2-1 Sc: 45.0 >>>>>>>..>>>>..........<<<<.>>>>......................................................................................................<<<<................>>>>>.......<<<<<<<<<<<<. AACCTCGTGGCGCAGT.GGTtA.GCGCGCCGTTCTTATAtcaaattttcgctagaagttgatatggtaatatccatctgaggtg..............................................A..TGCGGAT...........GtCGCGAGTTCGAATCTCGCCGGGGTTA tRNA-Ile-TAT-1-1 Sc: 62.6
Leu tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.............................................<<<<<..>>>..........<<<..>>>>>.......<<<<<.<<<<<<<. GGCAAGGTGGCCGAGTTGGTtA.TGGCGCCAGGTTAAGGatccattcttaacatcaata..................TCCTGGT.TCGGA......AACGAGCGTGGGTTCGAGTCCCAC.CCTTGTCA tRNA-Leu-AAG-1-1 Sc: 62.2 >>>>>>>..>>>>..........<<<<.>>>>>.............................................<<<<<..>>............<<..>>>>>.......<<<<<.<<<<<<<. GGGAGGGTGGCCGAGT.GGTtA.TGGCGCTACGTTTAGGcaaatgtagagcttttatcttcaaaactagat......CCGTAGT.TCGA........AAGAGCGTGGGTTCGAATCCCAC.CCCTCTCA tRNA-Leu-TAG-1-1 Sc: 54.3 >>>>>>>..>>>>..........<<<<.>>>>>.............................................<<<<<..>>>..........<<<..>>>>>.......<<<<<.<<<<<<<. GGAAAGGTGGCCGAGT.GGTtA.TGGCGAATGACTCAAGctataaacgcttcgaacagggttcaacctggttgtgcaTTCATTT.GGAGA......GATCCGCGTGGGTTCGAATCCCAC.CCTTTTCA tRNA-Leu-CAA-1-1 Sc: 56.4 >>>>>>>..>>>............<<<.>>>>>.............................................<<<<<..>.>>........<<.<..>>>>>.......<<<<<.<<<<<<<. GCTGTGGTGGCCGAGT.GGTtA.AGGCGTCTGTCTTAAGttatttaatct...........................AACAGATGGAGT........ATCCGCGCAAGTTCGAACCTTGC.CCACAGCA tRNA-Leu-TAA-1-1 Sc: 72.4
Lys tRNAs
>>>>>>>..>>>>.........<<<<.>>.>>................<<.<<................>>>>>.......<<<<<<<<<<<<. GCCGGGGTAGCTCAATCGGT.AGAGCGTGTGGCTCTTAcaaaagaacACCTCAAG...........GtCGCGGGTTCGAGCCCCGCCTTCGGCT tRNA-Lys-CTT-1-1 Sc: 77.3 >>>>>>>..>>.>.........<.<<.>>>>>................<<<<<................>>>>>.......<<<<<<<<<<<<. GCCCGGGTAGCGCAATTGGCtAGAGCGTAAGACTTTTAtaccgaa..ATCTTAAG...........GtTGAGGGTTCGAGCCCCTCCTCGGGCG tRNA-Lys-TTT-1-1 Sc: 64.5
Met tRNAs
>>>>>>>..>>>>..........<<<<.>>>>.......................................<<<<................>>>>>.......<<<<<<<<<<<<. GTCTGGATGGCTTAGTTGGTtA.AAGCGTCGGTCTCATAttgatatatgactactcgtcacgagtagctATCCGAAG...........GtCGTGAGTTCGACCCTCACTCCGGACA tRNA-Met-CAT-1-1 Sc: 73.1 >>>>>>>..>>>>..........<<<<.>>>>>.....................................<<<<<................>>>>>.......<<<<<<<<<<<<. AGCAACGTGGCGCAGC.GGA.A.GCGCGCCGGGCTCATA..............................ACCCGGAG...........GaCGCTGGATCGAAACCAGCCGTTGCTA tRNA-iMet-CAT-1-1 Sc: 70.6
Phe tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<. GCGACTTTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAG...........GtCACCCGTTCGATCCGGGTAAGTCGCA tRNA-Phe-GAA-1-1 Sc: 76.0
Pro tRNAs
>>.......>>>..........<<<.>>>>>........................<<<<<................>>>>>.......<<<<<.......<<. GG.......GTCTAGTGGTA.TGATTCTCGCTTAGGGtccaccctaaacatgatTGCGAGAG...........GcCCCGCGTTCGAATCGCGG..C....CCG tRNA-Pro-AGG-1-1 Sc: 33.9 >>>>>>>..>>>>........<<<<.>>>>>........................<<<<<................>>>>>.......<<<<<..<<<<<<<. GGCTGGATAGTTCAGTGGCA.GAATTCTTGCTTTGGGtcccgccaatt......TGTAAGAG...........GtCCTGGGTTCAAATCCCAG..TTCAGCCC tRNA-Pro-TGG-1-1 Sc: 61.2
SeC tRNAs
Ser tRNAs
>>>>>>>..>>>...........<<<.>>>>>.............................<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<. GACACTTTGGCCGAGTGGTtA.AGGCGAAAGACTAGAA......................ATCTTTTGGGTTC......GCCCGCACAGGTTCGAGTCCTGT.AGGTGTCG tRNA-Ser-AGA-1-1 Sc: 75.1 >>>>>>>..>>>...........<<<.>>>>>.............................<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<. GACACTTTGGCCGAGTGGTtA.AGGCGACAGACTCGAAttttctgat.............ATCTGTTTCATTC......GTGAGCGCAGGTTCAAATCCTGC.AGGTGTCG tRNA-Ser-CGA-1-1 Sc: 64.1 >>>>>>>..>>>...........<<<.>>>>>.............................<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<. GACACTTTGGCCGAGTGGTtA.AGGCGACAGACTTGAAtttctgattcggac........ATCTGTTTCATTC......GTGAGCGCAGGTTCGAACCCTGC.AGGTGTCG tRNA-Ser-TGA-1-1 Sc: 64.6 >>>>>>>..>>>...........<<<.>>>>...............................<<<<.>>>..........<<<..>>>>>.......<<<<<.<<<<<<<. GACACTATGGCCGAGTGGTtA.AGGCGTCTGATTACTA......................TCCAGATTCC.TTTG.....GGAGCACAGGTTCGATTCCTGT.TGGTGTCG tRNA-Ser-ACT-1-1 Sc: 65.7 >>>>>>>..>>>...........<<<.>>>>>.............................<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<. GACACTTTGGCCGAGTGGTtA.AGGCGACGGCCTGCTAttctagcaggaccatgtgtgacAGCCGTTGTGTTC......GCACGCGCAGGTTCGAATCCTGC.AGGTGTCG tRNA-Ser-GCT-1-1 Sc: 70.4
Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>........<<<<.>>>>>....................<<<<<................>>>>>.......<<<<<<<<<<<<. GCCCGAGTGGCTCAATGGTA.GAGCGCATCACTAGTAaaaattcgttcc.ATGATGAG...........GtTCCAGGTTCGATTCCTGGCTCGGGCA tRNA-Thr-AGT-1-1 Sc: 78.4 >>>>>>>..>>>..........<<<.>>>>>....................<<<<<................>>>>>.......<<<<<<<<<<<<. GCCCGCTTGGCATAGTGGTA.CTGCGTTTCACTCGTActtttatgtgaatATGAAAAG...........AtCCTCGGTTCGATTCCGAGAGTGGGCA tRNA-Thr-CGT-1-1 Sc: 64.6 >>>>>>>..>>>>........<<<<.>>>>>....................<<<<<................>>>>>.......<<<<<<<<<<<<. GCCCCTATAGCTCAGGGGTA.GAGCGTTGCACTTGTA.............ATGCAAAG...........GcCGATAGTTCAAATCTGTCTGGGGGCA tRNA-Thr-TGT-1-1 Sc: 79.5
Trp tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.........................<<<<<................>>>>>.......<<<<<<<<<<<<. GGACCCGTGGCGCAACGGCA.GCGCGTTCGACTCCAGttcctaccaagcccaggcATCGAAAG...........GtTATCCGTTCAAATCGGGTCGGGTTCA tRNA-Trp-CCA-1-1 Sc: 56.0 >>>>>>>..>>>>........<<<<.>>>>...........................<<<<................>>>>>.......<<<<<<<<<<<<. GGGCCATTGGCGCAATGGTA.GCGCATTTGATTCCACttctgtctggtgat....TCCAAAAG...........GtTATCCGTTCAAGTCGGATATGGCTCA tRNA-Trp-CCA-2-1 Sc: 45.9
Tyr tRNAs
>>>>>>>..>>>>........<<<<.>>>>>......................<<<<<................>>>>>.......<<<<<<<<<<<<. CCTTCGGTAACTCAGTTGGAAGAGTGCACGGCTGTAAttgcagaccattgatACCGTGAG...........GtCGCTGGTTCGATCCCGGCCCGAAGGA tRNA-Tyr-GTA-1-1 Sc: 70.5
Val tRNAs
>>>>>>>..>>>............<<<.>>>>>................................<<<<<................>>>>>.......<<<<<<<<<<<<. GGTCGGATGGTGTAGTTGGTtA.TCACGTGTCCTTAACAtaata....................CGGACAAG...........GtCCTGGGTTCGAACCCCAGTCTGATCA tRNA-Val-AAC-1-1 Sc: 70.8 >>>>>>>..>>>............<<<.>>>>>................................<<<<<................>>>>>.......<<<<<<<<<<<<. AGTTGCATGGTCTAAT.GGTtA.TGATTTCTCGTTCACAgcgatgtgaatctatgcttaatgcaCCGAGAAG...........GtTCTGAGTTCGATCCTCAGTGCAACTA tRNA-Val-CAC-1-1 Sc: 55.5 >>>>>>>..>>>............<<<.>>>>>................................<<<<<................>>>>>.......<<<<<<<<<<<<. GGACGCGTAGTATAGT.GGTcA.TTATGTCTCCTTTACAgtttcatctgtgatc..........CGGAGAAG...........GtCGCATGTTCGAGCCATGCCGCGTTCA tRNA-Val-TAC-1-1 Sc: 57.1