tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Mon Aug 21 19:48:11 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         30
Seqs w/at least 1 hit:  17
Bases read:             36682060 (x2 for both strands)
Bases in tRNAs:         4381
tRNAs predicted:        48
Av. tRNA length:        91
Script CPU time:        3.71 s
Scan CPU time:          150.97 s
Scan speed:             486.0 Kbp/sec

First pass search(es) ended: Mon Aug 21 19:48:38 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     48
Infernal-confirmed tRNAs:     47
Bases scanned by Infernal:  5341
% seq scanned by Infernal:  0.0 %
Script CPU time:          0.78 s
Infernal CPU time:            41.36 s
Scan speed:               129.1 bp/sec

Infernal analysis of tRNAs ended: Mon Aug 21 19:49:30 PDT 2017

Overall scan speed: 372747.3 bp/sec