tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Mon Aug 21 19:49:39 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         155
Seqs w/at least 1 hit:  41
Bases read:             26894178 (x2 for both strands)
Bases in tRNAs:         18962
tRNAs predicted:        201
Av. tRNA length:        94
Script CPU time:        3.13 s
Scan CPU time:          139.14 s
Scan speed:             386.6 Kbp/sec

First pass search(es) ended: Mon Aug 21 19:50:50 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     201
Infernal-confirmed tRNAs:     201
Bases scanned by Infernal:  22982
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.44 s
Infernal CPU time:            154.55 s
Scan speed:               148.7 bp/sec

Infernal analysis of tRNAs ended: Mon Aug 21 19:53:51 PDT 2017

Overall scan speed: 179737.9 bp/sec