tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Mon Aug 21 19:59:29 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         31
Seqs w/at least 1 hit:  16
Bases read:             28908395 (x2 for both strands)
Bases in tRNAs:         11957
tRNAs predicted:        145
Av. tRNA length:        82
Script CPU time:        2.91 s
Scan CPU time:          132.89 s
Scan speed:             435.1 Kbp/sec

First pass search(es) ended: Mon Aug 21 19:59:50 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     145
Infernal-confirmed tRNAs:     142
Bases scanned by Infernal:  14857
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.31 s
Infernal CPU time:            96.94 s
Scan speed:               153.3 bp/sec

Infernal analysis of tRNAs ended: Mon Aug 21 20:01:41 PDT 2017

Overall scan speed: 247027.5 bp/sec