tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Mon Aug 21 20:10:54 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         256
Seqs w/at least 1 hit:  62
Bases read:             28693256 (x2 for both strands)
Bases in tRNAs:         10697
tRNAs predicted:        128
Av. tRNA length:        83
Script CPU time:        4.23 s
Scan CPU time:          135.39 s
Scan speed:             423.9 Kbp/sec

First pass search(es) ended: Mon Aug 21 20:13:02 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     128
Infernal-confirmed tRNAs:     124
Bases scanned by Infernal:  13257
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.32 s
Infernal CPU time:            108.84 s
Scan speed:               121.8 bp/sec

Infernal analysis of tRNAs ended: Mon Aug 21 20:15:29 PDT 2017

Overall scan speed: 228832.1 bp/sec