tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Mon Aug 21 20:15:36 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         624
Seqs w/at least 1 hit:  83
Bases read:             27347311 (x2 for both strands)
Bases in tRNAs:         10123
tRNAs predicted:        121
Av. tRNA length:        83
Script CPU time:        5.24 s
Scan CPU time:          185.44 s
Scan speed:             294.9 Kbp/sec

First pass search(es) ended: Mon Aug 21 20:19:54 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     121
Infernal-confirmed tRNAs:     116
Bases scanned by Infernal:  12543
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.66 s
Infernal CPU time:            114.45 s
Scan speed:               109.6 bp/sec

Infernal analysis of tRNAs ended: Mon Aug 21 20:22:38 PDT 2017

Overall scan speed: 177701.1 bp/sec