tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Mon Aug 21 20:55:06 PDT 2017

------------------------------------------------------------
Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass Stats:
---------------
Sequences read:         654
Seqs w/at least 1 hit:  79
Bases read:             51644307 (x2 for both strands)
Bases in tRNAs:         27481
tRNAs predicted:        315
Av. tRNA length:        87
Script CPU time:        7.22 s
Scan CPU time:          287.35 s
Scan speed:             359.5 Kbp/sec

First pass search(es) ended: Mon Aug 21 20:59:04 PDT 2017

Infernal Stats:
-----------
Candidate tRNAs read:     315
Infernal-confirmed tRNAs:     312
Bases scanned by Infernal:  33781
% seq scanned by Infernal:  0.0 %
Script CPU time:          4.20 s
Infernal CPU time:            237.22 s
Scan speed:               142.4 bp/sec

Infernal analysis of tRNAs ended: Mon Aug 21 21:03:54 PDT 2017

Overall scan speed: 192706.2 bp/sec